8. Transforming attributes

_images/dialogTransformAttribute.png

Fig. 8.1 icon-transform-attributes Variable transformation and batch transformation functionality

When variables are defined in incommensurate ranges or scales, they can be standardized to avoid problems inherent when mixing measurement units, and normalization is employed to avoid having extreme values dominate an indicator, and to partially correct for data quality problems. The QGIS platform natively provides a Field calculator that can be used to update existing fields, or to create new ones, in order to perform a wide variety of mathematical operations for the standardization/transformation of data. In addition, the  OpenQuake IRMT provides a number of transformation functions found in popular statistical and mathematical modelling packages (Table 8.1).

Table 8.1 Selection of transformation functions with equations found in the OpenQuake IRMT.
Standardization (or Z-scores) Z(x_i) = \frac{x_i-\mu_x}{\sigma_x} \; (\mu_x = mean \; \sigma_x = stddev)
Min-Max M(x_i) = \frac{x_i - \min_{i \in \{1,\dots,n\}}(x_i)}{\max_{i \in \{1,\dots,n\}}(x_i) - \min_{i \in \{1,\dots,n\}}(x_i)}
Logistig Sigmoid S(x_i) = \frac{1}{1 + e^{-x_i}}
Simple Quadratic Q(x_i) = \frac{x^2}{\max_{i \in \{1,\dots,n\}}(x_i)}

Warning

Not all layer types can be edited. For instance, it is impossible to add or modify fields of a csv-based layer. Prior to apply transformations to non-editable layers, it is necessary to save them as shapefiles or as another editable kind.

These include:

  1. Ranking is the simplest standardization technique. It is not affected by outliers and allows the performance of enumeration units to be benchmarked over time in terms of their relative positions (rankings). The ranking algorithm deals with ties using a chosen strategy between those listed below (see https://en.wikipedia.org/wiki/Ranking#Strategies_for_assigning_rankings):

    • Average - Fractional (1 2.5 2.5 4)
    • Standard competition - Minimum (1 2 2 4)
    • Modified competition - Maximum (1 3 3 4)
    • Dense (1 2 2 3)
    • Ordinal (1 2 3 4)

  2. Z-scores normalization is the most common standardization technique. A Z-score converts indicators to a common scale with a mean of zero and standard deviation of one. Indicators with outliers that are extreme values may have a greater effect on the composite indicator. The latter may not be desirable if the intention is to support compensability where a deficit in one variable can be offset (or compensated) by a surplus in another. Summarizing: Z-score handles outliers, but does not produce normalized data with the exact same scale.

  3. Min-Max normalization is a type of transformation that rescales variables into an identical range between 0 and 1. Extreme values/or outliers could distort the transformed risk indicator. However, the Min-Max transformation can widen a range of indicators lying within a small interval, increasing the effect of the variable on the composite indicator more than the Z-scores. In brief: Min-Max guarantees all normalized fields will have the exact same scale but does not handle outliers well.

  4. Log10 is one of a class of logarithmic transformations that include natural log, log2, log3, log4, etc. Within the current plugin, we offer functionality for log10 only, yet these transformations are possible within the advanced field calculator. A logarithm of any negative number or zero is undefined. This algorithm copes with the case in which any zeros are present in the input data, offering two strategies:

    • Ignore zeros: each zero in input is transformed into nan
    • Increment all values by one: each input value is incremented by 1 before running the transformation.

    The algorithm uses the numpy.log10 function to transform the (possibly modified) list of values.

  5. Sigmoid function is a transformation function having an S shape (sigmoid curve). A Sigmoid function is used to transform values on (-\infty, \infty) into numbers on (0, 1). The Sigmoid function is often utilized because the transformation is relative to a convergence upon an upper limit as defined by the S-curve. The OpenQuake IRMT utilizes a simple sigmoid function as well as its inverse. The Inverse of the Sigmoid function is a logit function which transfers variables on (0, 1) into a new variable on (-\infty, \infty).

  6. Quadratic or U-shaped functions are the product of a polynomial equation of degree 2. In a quadratic function, the variable is always squared resulting in a parabola or U-shaped curve. The OpenQuake IRMT offers an increasing or decreasing variant of the quadratic equation for horizontal translations and the respective inverses of the two for vertical translations.

Note

It may be desirable to visualize the results of the application of transformation functions to data. Although not feasible within the plugin at this point, we intend to build data plotting and curve manipulating functionalities into future versions of the toolkit.

The Transform attribute dialog (Fig. 8.1) was designed to be quite straightforward. The user is required to select one or more numeric fields (variables) available in the active layer. For the selection to be completed, the user must move the variables (either one at a time, or in a batch) to the Selected variables window on the right side of the interface. The user must then select the function necessary to transform the selected variables. For some functions, more than one variant is available. For functions that have an implementation of an inverse transformation, the Inverse checkbox will be enabled to allow users to invert the outcome of the transformation.

The New field(s) section contains two checkboxes and a text field. If the first checkbox Overwrite the field(s) is selected, the original values of the transformed fields will be overwritten by the results of the calculations; otherwise, a new field for each transformed variable will be created to store the results. In situations in which a user may desire to transform variables one at a time rather than using a batch transformation process, it is possible for the user to name each respective new field (editing the default one proposed by the tool). Otherwise, the names of the new fields will be automatically assigned using the following convention: if the original attribute is named ORIGINALNA, the name of the transformed attribute becomes _ORIGINALN (prepending “_” and truncating to 10 characters which is the maximum length permitted for field names in shapefiles). If the layer does not have the limitations of a shapefile, the name of the transformed field will not be truncated to 10 characters.

Note

In the lists of fields, both the field name and the field alias are displayed, with the format name (alias). If no alias is specified for the field, the parenthesis will be empty. The plugin automatically assigns to the transformed field the same alias of the original one (if available). Please make sure that the names of the fields to be transformed do not contain parentheses, otherwise the plugin would erroneously interpret them as containers for the alias; therefore the selected name would be incomplete (being taken excluding the parentheses) and it would not be found in the layer.

If the checkbox Let all project definitions utilize transformed values is checked, all the project definitions associated with the active layer will reference the transformed fields instead of the original ones. Otherwise, they will keep the links to the original selected attributes. In most cases it is recommended to keep this checkbox checked. This automatic update of field references simplifies the workflow because it avoids the need to manually remove the original nodes from the weighting and aggregation tree (discussed in detail in Weighting data and calculating indices) in order to add the transformed nodes and to set again the nodes’ weights. In other words, if a project was developed by weighting and aggregating untransformed indicators, this functionality allows for variables used in the project definition to be replaced on-the-fly (and automatically) by transformed variables.  This saves the user from having to augment the model manually.

By clicking the Advanced Calculator button, the native QGIS field calculator is opened. Please refer to the code documentation for the detailed description of all the agorithms and variants provided by the OpenQuake IRMT.

The plugin is also an algorithm provider (the OpenQuake IRMT provider) for the Processing Toolbox. The transformation functions described above are available under the Field transformation group.