openquake.hazardlib.calc package¶
Hazardlib calculators¶
Disaggregation (disagg)¶
openquake.hazardlib.calc.disagg
contains
disaggregation()
as well as several aggregation functions for
extracting a specific PMF from the result of disaggregation()
.

openquake.hazardlib.calc.disagg.
build_disagg_matrix
(bdata, bin_edges, sid, mon=<class 'openquake.baselib.performance.Monitor'>)[source]¶ Parameters:  bdata – a dictionary of probabilities of no exceedence
 bin_edges – bin edges
 sid – site index
 mon – a Monitor instance
Returns: a dictionary key > matrixpmf for each key in bdata

openquake.hazardlib.calc.disagg.
collect_bin_data
(ruptures, sitecol, cmaker, iml4, truncation_level, n_epsilons, monitor=<Monitor [ubuntu]>)[source]¶ Parameters:  ruptures – a list of ruptures
 sitecol – a SiteCollection instance
 cmaker – a ContextMaker instance
 iml4 – an ArrayWrapper of intensities of shape (N, R, M, P)
 truncation_level – the truncation level
 n_epsilons – the number of epsilons
 monitor – a Monitor instance
Returns: a dictionary (poe, imt, rlzi) > probabilities of shape (N, E)

openquake.hazardlib.calc.disagg.
disaggregation
(sources, site, imt, iml, gsim_by_trt, truncation_level, n_epsilons, mag_bin_width, dist_bin_width, coord_bin_width, source_filter=<openquake.hazardlib.calc.filters.SourceFilter object>, filter_distance='rjb')[source]¶ Compute “Disaggregation” matrix representing conditional probability of an intensity mesaure type
imt
exceeding, at least once, an intensity measure leveliml
at a geographical locationsite
, given rupture scenarios classified in terms of: rupture magnitude
 JoynerBoore distance from rupture surface to site
 longitude and latitude of the surface projection of a rupture’s point
closest to
site
 epsilon: number of standard deviations by which an intensity measure level deviates from the median value predicted by a GSIM, given the rupture parameters
 rupture tectonic region type
In other words, the disaggregation matrix allows to compute the probability of each scenario with the specified properties (e.g., magnitude, or the magnitude and distance) to cause one or more exceedences of a given hazard level.
For more detailed information about the disaggregation, see for instance “Disaggregation of Seismic Hazard”, Paolo Bazzurro, C. Allin Cornell, Bulletin of the Seismological Society of America, Vol. 89, pp. 501520, April 1999.
Parameters:  sources – Seismic source model, as for
PSHA
calculator it should be an iterator of seismic sources.  site –
Site
of interest to calculate disaggregation matrix for.  imt – Instance of
intensity measure type
class.  iml – Intensity measure level. A float value in units of
imt
.  gsim_by_trt – Tectonic region type to GSIM objects mapping.
 truncation_level – Float, number of standard deviations for truncation of the intensity distribution.
 n_epsilons – Integer number of epsilon histogram bins in the result matrix.
 mag_bin_width – Magnitude discretization step, width of one magnitude histogram bin.
 dist_bin_width – Distance histogram discretization step, in km.
 coord_bin_width – Longitude and latitude histograms discretization step, in decimal degrees.
 source_filter – Optional sourcesite filter function. See
openquake.hazardlib.calc.filters
.
Returns: A tuple of two items. First is itself a tuple of bin edges information for (in specified order) magnitude, distance, longitude, latitude, epsilon and tectonic region types.
Second item is 6darray representing the full disaggregation matrix. Dimensions are in the same order as bin edges in the first item of the result tuple. The matrix can be used directly by pmfextractor functions.

openquake.hazardlib.calc.disagg.
dist_pmf
(matrix)[source]¶ Fold full disaggregation matrix to distance PMF.
Returns: 1d array, a histogram representing distance PMF.

openquake.hazardlib.calc.disagg.
get_shape
(bin_edges, sid)[source]¶ Returns: the shape of the disaggregation matrix for the given site, of form (#mags1, #dists1, #lons1, #lats1, #eps1)

openquake.hazardlib.calc.disagg.
lon_lat_bins
(bb, coord_bin_width)[source]¶ Define bin edges for disaggregation histograms.
Given bins data as provided by
collect_bin_data()
, this function finds edges of histograms, taking into account maximum and minimum values of magnitude, distance and coordinates as well as requested sizes/numbers of bins.

openquake.hazardlib.calc.disagg.
lon_lat_pmf
(matrix)[source]¶ Fold full disaggregation matrix to longitude / latitude PMF.
Returns: 2d array. First dimension represents longitude histogram bins, second one – latitude histogram bins.

openquake.hazardlib.calc.disagg.
lon_lat_trt_pmf
(matrices)[source]¶ Fold full disaggregation matrices to lon / lat / TRT PMF.
Parameters: matrices – a matrix with T submatrices Returns: 3d array. First dimension represents longitude histogram bins, second one latitude histogram bins, third one trt histogram bins.

openquake.hazardlib.calc.disagg.
mag_dist_eps_pmf
(matrix)[source]¶ Fold full disaggregation matrix to magnitude / distance / epsilon PMF.
Returns: 3d array. First dimension represents magnitude histogram bins, second one – distance histogram bins, third one – epsilon histogram bins.

openquake.hazardlib.calc.disagg.
mag_dist_pmf
(matrix)[source]¶ Fold full disaggregation matrix to magnitude / distance PMF.
Returns: 2d array. First dimension represents magnitude histogram bins, second one – distance histogram bins.

openquake.hazardlib.calc.disagg.
mag_lon_lat_pmf
(matrix)[source]¶ Fold full disaggregation matrix to magnitude / longitude / latitude PMF.
Returns: 3d array. First dimension represents magnitude histogram bins, second one – longitude histogram bins, third one – latitude histogram bins.

openquake.hazardlib.calc.disagg.
mag_pmf
(matrix)[source]¶ Fold full disaggregation matrix to magnitude PMF.
Returns: 1d array, a histogram representing magnitude PMF.
Filters (filters)¶

class
openquake.hazardlib.calc.filters.
IntegrationDistance
(dic)[source]¶ Bases:
collections.abc.Mapping
Pickleable object wrapping a dictionary of integration distances per tectonic region type. The integration distances can be scalars or list of pairs (magnitude, distance). Here is an example using ‘default’ as tectonic region type, so that the same values will be used for all tectonic region types:
>>> maxdist = IntegrationDistance({'default': [ ... (3, 30), (4, 40), (5, 100), (6, 200), (7, 300), (8, 400)]}) >>> maxdist('Some TRT', mag=2.5) 30 >>> maxdist('Some TRT', mag=3) 30 >>> maxdist('Some TRT', mag=3.1) 40 >>> maxdist('Some TRT', mag=8) 400 >>> maxdist('Some TRT', mag=8.5) # 2000 km are used above the maximum 2000

get_affected_box
(src)[source]¶ Get the enlarged bounding box of a source.
Parameters: src – a source object Returns: a bounding box (min_lon, min_lat, max_lon, max_lat)

get_bounding_box
(lon, lat, trt=None, mag=None)[source]¶ Build a bounding box around the given lon, lat by computing the maximum_distance at the given tectonic region type and magnitude.
Parameters:  lon – longitude
 lat – latitude
 trt – tectonic region type, possibly None
 mag – magnitude, possibly None
Returns: min_lon, min_lat, max_lon, max_lat


class
openquake.hazardlib.calc.filters.
Piecewise
(x, y)[source]¶ Bases:
object
Given two arrays x and y of nondecreasing values, build a piecewise function associating to each x the corresponding y. If x is smaller then the minimum x, the minimum y is returned; if x is larger than the maximum x, the maximum y is returned.

class
openquake.hazardlib.calc.filters.
RtreeFilter
(sitecol, integration_distance, filename=None)[source]¶ Bases:
openquake.hazardlib.calc.filters.SourceFilter
The RtreeFilter uses the rtree library. The index is generated at instantiation time and stored in a temporary file. The filter should be instantiated only once per calculation, after the site collection is known. It should be used as follows:
rfilter = RtreeFilter(sitecol, integration_distance) for src, sites in rfilter(sources): do_something(...)
As a side effect, sets the .indices attribute of the source, i.e. the number of sites within the integration distance. Notice that libspatialindex indices cannot be properly pickled (https://github.com/Toblerity/rtree/issues/65) this is why they must be saved on the file system where they can be read from the workers.
NB: an RtreeFilter has an .indexpath attribute, but not a .sitecol attribute nor an .index attribute, so it can be pickled and transferred easily.
Parameters:  sitecol –
openquake.hazardlib.site.SiteCollection
instance  integration_distance – Integration distance dictionary (TRT > distance in km)

index
¶ Returns: the underlying index object
 sitecol –

class
openquake.hazardlib.calc.filters.
SourceFilter
(sitecol, integration_distance, filename=None)[source]¶ Bases:
object
Filter objects have a .filter method yielding filtered sources, i.e. sources with an attribute .indices, containg the IDs of the sites within the given maximum distance. There is also a .new method that filters the sources in parallel and returns a dictionary src_group_id > filtered sources. Filter the sources by using self.sitecol.within_bbox which is based on numpy.

close_sids
(rec, trt, mag)[source]¶ Parameters:  rec – a record with fields minlon, minlat, maxlon, maxlat
 trt – tectonic region type string
 mag – magnitude
Returns: the site indices within the bounding box enlarged by the integration distance for the given TRT and magnitude

get_bounding_boxes
(trt=None, mag=None)[source]¶ Parameters:  trt – a tectonic region type (used for the integration distance)
 mag – a magnitude (used for the integration distance)
Returns: a list of bounding boxes, one per site

get_close_sites
(source)[source]¶ Returns the sites within the integration distance from the source, or None.

get_rectangle
(src)[source]¶ Parameters: src – a source object Returns: ((min_lon, min_lat), width, height), useful for plotting

sitecol
¶ Read the site collection from .filename and cache it


openquake.hazardlib.calc.filters.
context
(src)[source]¶ Used to add the source_id to the error message. To be used as
 with context(src):
 operation_with(src)
Typically the operation is filtering a source, that can fail for tricky geometries.
Ground Motion Fields (gmf)¶
Module gmf
exports
ground_motion_fields()
.

exception
openquake.hazardlib.calc.gmf.
CorrelationButNoInterIntraStdDevs
(corr, gsim)[source]¶ Bases:
Exception

class
openquake.hazardlib.calc.gmf.
GmfComputer
(rupture, sitecol, imts, cmaker, truncation_level=None, correlation_model=None)[source]¶ Bases:
object
Given an earthquake rupture, the ground motion field computer computes ground shaking over a set of sites, by randomly sampling a ground shaking intensity model.
Parameters: rupture – Rupture to calculate ground motion fields radiated from.  :param
openquake.hazardlib.site.SiteCollection
sitecol:  a complete SiteCollection
Parameters:  imts – a sorted list of Intensity Measure Type strings
 cmaker – a
openquake.hazardlib.gsim.base.ContextMaker
instance  truncation_level – Float, number of standard deviations for truncation of the intensity
distribution, or
None
.  correlation_model – Instance of correlation model object. See
openquake.hazardlib.correlation
. Can beNone
, in which case noncorrelated ground motion fields are calculated. Correlation model is not used iftruncation_level
is zero.

compute
(gsim, num_events, seed=None)[source]¶ Parameters:  gsim – a GSIM instance
 num_events – the number of seismic events
 seed – a random seed or None
Returns: a 32 bit array of shape (num_imts, num_sites, num_events) and two arrays with shape (num_imts, num_events): sig for stddev_inter and eps for the random part
 :param

openquake.hazardlib.calc.gmf.
ground_motion_fields
(rupture, sites, imts, gsim, truncation_level, realizations, correlation_model=None, seed=None)[source]¶ Given an earthquake rupture, the ground motion field calculator computes ground shaking over a set of sites, by randomly sampling a ground shaking intensity model. A ground motion field represents a possible ‘realization’ of the ground shaking due to an earthquake rupture.
Note
This calculator is using random numbers. In order to reproduce the same results numpy random numbers generator needs to be seeded, see http://docs.scipy.org/doc/numpy/reference/generated/numpy.random.seed.html
Parameters:  rupture (openquake.hazardlib.source.rupture.Rupture) – Rupture to calculate ground motion fields radiated from.
 sites (openquake.hazardlib.site.SiteCollection) – Sites of interest to calculate GMFs.
 imts – List of intensity measure type objects (see
openquake.hazardlib.imt
).  gsim – Groundshaking intensity model, instance of subclass of either
GMPE
orIPE
.  truncation_level – Float, number of standard deviations for truncation of the intensity
distribution, or
None
.  realizations – Integer number of GMF realizations to compute.
 correlation_model – Instance of correlation model object. See
openquake.hazardlib.correlation
. Can beNone
, in which case noncorrelated ground motion fields are calculated. Correlation model is not used iftruncation_level
is zero.  seed (int) – The seed used in the numpy random number generator
Returns: Dictionary mapping intensity measure type objects (same as in parameter
imts
) to 2d numpy arrays of floats, representing different realizations of ground shaking intensity for all sites in the collection. First dimension represents sites and second one is for realizations.
Hazard Curves (hazard_curve)¶
openquake.hazardlib.calc.hazard_curve
implements
calc_hazard_curves()
. Here is an example of a classical PSHA
parallel calculator computing the hazard curves per each realization in less
than 20 lines of code:
import sys
import logging
from openquake.baselib import parallel
from openquake.hazardlib.calc.filters import SourceFilter
from openquake.hazardlib.calc.hazard_curve import calc_hazard_curves
from openquake.commonlib import readinput
def main(job_ini):
logging.basicConfig(level=logging.INFO)
oq = readinput.get_oqparam(job_ini)
sitecol = readinput.get_site_collection(oq)
src_filter = SourceFilter(sitecol, oq.maximum_distance)
csm = readinput.get_composite_source_model(oq, srcfilter=src_filter)
rlzs_assoc = csm.info.get_rlzs_assoc()
for i, sm in enumerate(csm.source_models):
for rlz in rlzs_assoc.rlzs_by_smodel[i]:
gsim_by_trt = rlzs_assoc.gsim_by_trt[rlz.ordinal]
hcurves = calc_hazard_curves(
sm.src_groups, src_filter, oq.imtls,
gsim_by_trt, oq.truncation_level,
parallel.Starmap.apply)
print('rlz=%s, hcurves=%s' % (rlz, hcurves))
if __name__ == '__main__':
main(sys.argv[1]) # path to a job.ini file
NB: the implementation in the engine is smarter and more efficient. Here we start a parallel computation per each realization, the engine manages all the realizations at once.

openquake.hazardlib.calc.hazard_curve.
calc_hazard_curves
(groups, ss_filter, imtls, gsim_by_trt, truncation_level=None, apply=<function sequential_apply>, filter_distance='rjb', reqv=None)[source]¶ Compute hazard curves on a list of sites, given a set of seismic source groups and a dictionary of ground shaking intensity models (one per tectonic region type).
Probability of ground motion exceedance is computed in different ways depending if the sources are independent or mutually exclusive.
Parameters:  groups – A sequence of groups of seismic sources objects (instances of
of
BaseSeismicSource
).  ss_filter – A source filter over the site collection or the site collection itself
 imtls – Dictionary mapping intensity measure type strings to lists of intensity measure levels.
 gsim_by_trt – Dictionary mapping tectonic region types (members
of
openquake.hazardlib.const.TRT
) toGMPE
orIPE
objects.  truncation_level – Float, number of standard deviations for truncation of the intensity distribution.
 apply – apply function to use (default sequential_apply)
 filter_distance – The distance used to filter the ruptures (default rjb)
 reqv – If not None, an instance of RjbEquivalent
Returns: An array of size N, where N is the number of sites, which elements are records with fields given by the intensity measure types; the size of each field is given by the number of levels in
imtls
. groups – A sequence of groups of seismic sources objects (instances of
of

openquake.hazardlib.calc.hazard_curve.
classical
(group, src_filter, gsims, param, monitor=<Monitor [ubuntu]>)[source]¶ Compute the hazard curves for a set of sources belonging to the same tectonic region type for all the GSIMs associated to that TRT. The arguments are the same as in
calc_hazard_curves()
, except forgsims
, which is a list of GSIM instances.Returns: a dictionary {grp_id: pmap} with attributes .grp_ids, .calc_times, .eff_ruptures
Stochastic Event Set (stochastic)¶
openquake.hazardlib.calc.stochastic
contains
stochastic_event_set()
.

openquake.hazardlib.calc.stochastic.
get_rup_array
(ebruptures, srcfilter=<openquake.hazardlib.calc.filters.SourceFilter object>)[source]¶ Convert a list of EBRuptures into a numpy composite array, by filtering out the ruptures far away from every site

openquake.hazardlib.calc.stochastic.
sample_cluster
(sources, num_ses, param)[source]¶ Yields ruptures generated by a cluster of sources.
Parameters:  sources – A sequence of (prefiltered) sources of the same group
 num_ses – Number of stochastic event sets
 param – a dictionary of additional parameters including ses_per_logic_tree_path
Yields: dictionaries with keys rup_array, calc_times, eff_ruptures

openquake.hazardlib.calc.stochastic.
sample_ruptures
(sources, srcfilter, param, monitor=<Monitor [ubuntu]>)[source]¶ Parameters:  sources – a sequence of (prefiltered) sources of the same group
 srcfilter – SourceFilter instance used for bounding box post filtering
 param – a dictionary of additional parameters including ses_per_logic_tree_path
 monitor – monitor instance
Yields: dictionaries with keys rup_array, calc_times, eff_ruptures

openquake.hazardlib.calc.stochastic.
stochastic_event_set
(sources, source_site_filter=<openquake.hazardlib.calc.filters.SourceFilter object>)[source]¶ Generates a ‘Stochastic Event Set’ (that is a collection of earthquake ruptures) representing a possible realization of the seismicity as described by a source model.
The calculator loops over sources. For each source, it loops over ruptures. For each rupture, the number of occurrence is randomly sampled by calling
openquake.hazardlib.source.rupture.BaseProbabilisticRupture.sample_number_of_occurrences()
Note
This calculator is using random numbers. In order to reproduce the same results numpy random numbers generator needs to be seeded, see http://docs.scipy.org/doc/numpy/reference/generated/numpy.random.seed.html
Parameters:  sources – An iterator of seismic sources objects (instances of subclasses
of
BaseSeismicSource
).  source_site_filter – The source filter to use (default noop filter)
Returns: Generator of
Rupture
objects that are contained in an event set. Some ruptures can be missing from it, others can appear one or more times in a row. sources – An iterator of seismic sources objects (instances of subclasses
of