# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (C) 2015-2025 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# OpenQuake is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Affero General Public License for more details.
#
# You should have received a copy of the GNU Affero General Public License
# along with OpenQuake. If not, see <http://www.gnu.org/licenses/>.
import io
import math
import time
import os.path
import logging
import numpy
import pandas
from shapely import geometry
from openquake.baselib import (
config, hdf5, parallel, python3compat, performance)
from openquake.baselib.general import (
AccumDict, humansize, block_splitter, group_array)
from openquake.hazardlib import valid, logictree, InvalidFile
from openquake.hazardlib.geo.packager import fiona
from openquake.hazardlib.map_array import MapArray, get_mean_curve
from openquake.hazardlib.stats import geom_avg_std, compute_stats
from openquake.hazardlib.calc.stochastic import sample_ruptures
from openquake.hazardlib.contexts import ContextMaker, FarAwayRupture
from openquake.hazardlib.calc.filters import (
close_ruptures, magstr, nofilter, getdefault, get_distances, SourceFilter)
from openquake.hazardlib.calc.gmf import GmfComputer
from openquake.hazardlib.calc.conditioned_gmfs import ConditionedGmfComputer
from openquake.hazardlib.calc.stochastic import get_rup_array, rupture_dt
from openquake.hazardlib.source.rupture import (
RuptureProxy, EBRupture, get_ruptures_aw)
from openquake.hazardlib.shakemap.parsers import adjust_hypocenter
from openquake.commonlib import util, logs, readinput, datastore
from openquake.commonlib.calc import (
gmvs_to_poes, make_hmaps, slice_dt, build_slice_by_event, RuptureImporter,
SLICE_BY_EVENT_NSITES, get_close_mosaic_models, get_proxies)
from openquake.risklib.riskinput import str2rsi, rsi2str
from openquake.calculators import base, views
from openquake.calculators.getters import sig_eps_dt
from openquake.calculators.classical import ClassicalCalculator
from openquake.calculators.extract import Extractor
from openquake.calculators.postproc.plots import plot_avg_gmf
from openquake.calculators.base import expose_outputs
from PIL import Image
U8 = numpy.uint8
U16 = numpy.uint16
U32 = numpy.uint32
I64 = numpy.int64
F32 = numpy.float32
F64 = numpy.float64
TWO24 = 2 ** 24
TWO32 = numpy.float64(2 ** 32)
rup_dt = numpy.dtype(
[('rup_id', I64), ('rrup', F32), ('time', F32), ('task_no', U16)])
[docs]def rup_weight(rup):
# rup['nsites'] is 0 if the ruptures were generated without a sitecol
if isinstance(rup, numpy.ndarray):
nsites = numpy.clip(rup['nsites'], 1., numpy.inf)
return numpy.ceil(nsites / 100.)
return math.ceil((rup['nsites'] or 1) / 100.)
# ######################## hcurves_from_gmfs ############################ #
# can be used as a postprocessor
[docs]def build_hcurves(dstore):
"""
Build the hazard curves from each realization starting from
the stored GMFs. Works only for few sites.
"""
oq = dstore['oqparam']
# compute and save statistics; this is done in process and can
# be very slow if there are thousands of realizations
weights = dstore['weights'][:]
sitecol = dstore['sitecol']
# NB: in the future we may want to save to individual hazard
# curves if oq.individual_rlzs is set; for the moment we
# save the statistical curves only
hstats = oq.hazard_stats()
S = len(hstats)
R = len(weights)
N = len(sitecol)
M = len(oq.imtls)
C = M + len(oq.sec_imts)
L1 = oq.imtls.size // M
gmf_df = dstore.read_df('gmf_data', 'eid').join(
dstore.read_df('events', 'id')[['rlz_id']])
imtls = {imt: imls for imt, imls in oq.imtls.items()}
for sec_imt in oq.sec_imts:
min_ = gmf_df[sec_imt].min() + 1E-10 # to ensure min_ > 0
max_ = gmf_df[sec_imt].max() + 2E-10 # to ensure max_ > min_
imtls[sec_imt] = valid.logscale(min_, max_, L1)
hc_mon = performance.Monitor('building hazard curves', measuremem=False,
h5=dstore)
hcurves = {}
for (sid, rlz), df in gmf_df.groupby(['sid', 'rlz_id']):
with hc_mon:
poes = gmvs_to_poes(df, imtls, oq.ses_per_logic_tree_path)
for m, imt in enumerate(imtls):
hcurves[rsi2str(rlz, sid, imt)] = poes[m]
pmaps = {r: MapArray(sitecol.sids, L1*C, 1).fill(0)
for r in range(R)}
slc = {imt: slice(m * L1, m * L1 + L1) for m, imt in enumerate(imtls)}
for key, poes in hcurves.items():
r, sid, imt = str2rsi(key)
array = pmaps[r].array[sid, slc[imt], 0]
array[:] = 1. - (1. - array) * (1. - poes)
pmaps = [p.reshape(N, C, L1) for p in pmaps.values()]
if oq.individual_rlzs:
logging.info('Saving individual hazard curves')
dstore.create_dset('hcurves-rlzs', F32, (N, R, C, L1))
dstore.set_shape_descr('hcurves-rlzs', site_id=N, rlz_id=R,
imt=list(imtls), lvl=numpy.arange(L1))
if oq.poes:
P = len(oq.poes)
ds = dstore.create_dset(
'hmaps-rlzs', F32, (N, R, C, P))
dstore.set_shape_descr('hmaps-rlzs', site_id=N, rlz_id=R,
imt=list(imtls), poe=oq.poes)
for r in range(R):
dstore['hcurves-rlzs'][:, r] = pmaps[r].array
if oq.poes:
[hmap] = make_hmaps([pmaps[r]], oq.imtls, oq.poes)
ds[:, r] = hmap.array
if S:
logging.info('Computing statistical hazard curves')
dstore.create_dset('hcurves-stats', F32, (N, S, C, L1))
dstore.set_shape_descr('hcurves-stats', site_id=N, stat=list(hstats),
imt=list(imtls), lvl=numpy.arange(L1))
if oq.poes:
P = len(oq.poes)
ds = dstore.create_dset('hmaps-stats', F32, (N, S, C, P))
dstore.set_shape_descr('hmaps-stats', site_id=N, stat=list(hstats),
imt=list(imtls), poes=oq.poes)
for s, stat in enumerate(hstats):
smap = MapArray(sitecol.sids, L1, C)
[smap.array] = compute_stats(
numpy.array([p.array for p in pmaps]),
[hstats[stat]], weights)
dstore['hcurves-stats'][:, s] = smap.array
if oq.poes:
[hmap] = make_hmaps([smap], imtls, oq.poes)
ds[:, s] = hmap.array
# ######################## GMF calculator ############################ #
[docs]def count_ruptures(src):
"""
Count the number of ruptures on a heavy source
"""
return {src.source_id: src.count_ruptures()}
[docs]def get_computer(cmaker, proxy, srcfilter, station_data, station_sitecol):
"""
:returns: GmfComputer or ConditionedGmfComputer
"""
sids = srcfilter.close_sids(proxy, cmaker.trt)
if len(sids) == 0: # filtered away
raise FarAwayRupture
ebr = proxy.to_ebr(cmaker.trt)
oq = cmaker.oq
if station_sitecol:
stations = numpy.isin(sids, station_sitecol.sids)
if stations.any():
station_sids = sids[stations]
return ConditionedGmfComputer(
ebr, srcfilter.sitecol.filtered(sids),
srcfilter.sitecol.filtered(station_sids),
station_data.loc[station_sids],
oq.observed_imts,
cmaker, oq.correl_model, oq.cross_correl,
oq.ground_motion_correlation_params,
oq.number_of_ground_motion_fields,
oq._amplifier, oq._sec_perils)
else:
logging.warning('There are no stations!')
return GmfComputer(
ebr, srcfilter.sitecol.filtered(sids), cmaker,
oq.correl_model, oq.cross_correl,
oq._amplifier, oq._sec_perils)
def _event_based(proxies, cmaker, stations, srcfilter, shr,
fmon, cmon, umon, mmon):
oq = cmaker.oq
alldata = []
sig_eps = []
times = []
max_iml = oq.get_max_iml()
se_dt = sig_eps_dt(oq.imtls)
mea_tau_phi = []
for proxy in proxies:
t0 = time.time()
with fmon:
if proxy['mag'] < cmaker.min_mag:
continue
try:
computer = get_computer(cmaker, proxy, srcfilter, *stations)
except FarAwayRupture:
# skip this rupture
continue
if stations and stations[0] is not None: # conditioned GMFs
assert cmaker.scenario
with shr['mea'] as mea, shr['tau'] as tau, shr['phi'] as phi:
df = computer.compute_all(
[mea, tau, phi], max_iml, mmon, cmon, umon)
else: # regular GMFs
df = computer.compute_all(None, max_iml, mmon, cmon, umon)
if oq.mea_tau_phi:
mtp = numpy.array(computer.mea_tau_phi, GmfComputer.mtp_dt)
mea_tau_phi.append(mtp)
sig_eps.append(computer.build_sig_eps(se_dt))
dt = time.time() - t0
times.append((proxy['id'], computer.ctx.rrup.min(), dt))
alldata.append(df)
times = numpy.array([tup + (fmon.task_no,) for tup in times], rup_dt)
times.sort(order='rup_id')
if sum(len(df) for df in alldata) == 0:
return dict(gmfdata={}, times=times, sig_eps=())
gmfdata = pandas.concat(alldata) # ~40 MB
dic = dict(gmfdata={k: gmfdata[k].to_numpy() for k in gmfdata.columns},
times=times, sig_eps=numpy.concatenate(sig_eps, dtype=se_dt))
if oq.mea_tau_phi:
mtpdata = numpy.concatenate(mea_tau_phi, dtype=GmfComputer.mtp_dt)
dic['mea_tau_phi'] = {col: mtpdata[col] for col in mtpdata.dtype.names}
return dic
[docs]def event_based(proxies, cmaker, sitecol, stations, dstore, monitor):
"""
Compute GMFs and optionally hazard curves
"""
oq = cmaker.oq
rmon = monitor('reading sites and ruptures', measuremem=True)
fmon = monitor('instantiating GmfComputer', measuremem=False)
mmon = monitor('computing mean_stds', measuremem=False)
cmon = monitor('computing gmfs', measuremem=False)
umon = monitor('updating gmfs', measuremem=False)
cmaker.scenario = 'scenario' in oq.calculation_mode
with rmon:
srcfilter = SourceFilter(
sitecol.complete, oq.maximum_distance(cmaker.trt))
if isinstance(dstore, str):
# when passing ruptures.hdf5
proxies = get_proxies(dstore, proxies)
else:
with dstore:
dset = dstore['rupgeoms']
for proxy in proxies:
proxy.geom = dset[proxy['geom_id']]
for block in block_splitter(proxies, 20_000, rup_weight):
yield _event_based(block, cmaker, stations, srcfilter,
monitor.shared, fmon, cmon, umon, mmon)
[docs]def filter_stations(station_df, complete, rup, maxdist):
"""
:param station_df: DataFrame with the stations
:param complete: complete SiteCollection
:param rup: rupture
:param maxdist: maximum distance
:returns: filtered (station_df, station_sitecol)
"""
ns = len(station_df)
ok = (get_distances(rup, complete, 'rrup') <= maxdist) & numpy.isin(
complete.sids, station_df.index)
station_sites = complete.filter(ok)
if station_sites is None:
station_data = None
logging.warning('Discarded %d/%d stations more distant than %d km, '
'switching to the unconditioned GMF computer',
ns, ns, maxdist)
else:
station_data = station_df[
numpy.isin(station_df.index, station_sites.sids)]
assert len(station_data) == len(station_sites), (
len(station_data), len(station_sites))
if len(station_data) < ns:
logging.info('Discarded %d/%d stations more distant than %d km',
ns - len(station_data), ns, maxdist)
return station_data, station_sites
[docs]def starmap_from_rups_hdf5(oq, sitecol, dstore):
"""
:returns: a Starmap instance sending event_based tasks
"""
ruptures_hdf5 = oq.inputs['rupture_model']
trts = {}
rlzs_by_gsim = {}
with hdf5.File(ruptures_hdf5) as r:
for model in r['full_lt']:
full_lt = r[f'full_lt/{model}']
trts[model] = full_lt.trts
logging.info('Building rlzs_by_gsim for %s', model)
for trt_smr, rbg in full_lt.get_rlzs_by_gsim_dic().items():
rlzs_by_gsim[model, trt_smr] = rbg
dstore['full_lt'] = full_lt # saving the last lt (hackish)
r.copy('events', dstore.hdf5) # saving the events
manysites = len(sitecol) > oq.max_sites_disagg
if manysites:
logging.info('Reading {:_d} ruptures'.format(len(r['ruptures'])))
rups = r['ruptures'][:]
else:
logging.info('Selecting the ruptures close to the sites')
rups = close_ruptures(r['ruptures'][:], sitecol)
dstore['ruptures'] = rups
R = full_lt.num_samples
dstore['weights'] = numpy.ones(R) / R
rups_dic = group_array(rups, 'model', 'trt_smr')
totw = sum(rup_weight(rups).sum() for rups in rups_dic.values())
maxw = totw / (oq.concurrent_tasks or 1)
logging.info(f'{maxw=}')
extra = sitecol.array.dtype.names
dstore.swmr_on()
smap = parallel.Starmap(event_based, h5=dstore.hdf5)
for (model, trt_smr), rups in rups_dic.items():
model = model.decode('ascii')
trt = trts[model][trt_smr // TWO24]
mags = numpy.unique(numpy.round(rups['mag'], 2))
oq.mags_by_trt = {trt: [magstr(mag) for mag in mags]}
cmaker = ContextMaker(trt, rlzs_by_gsim[model, trt_smr],
oq, extraparams=extra)
cmaker.min_mag = getdefault(oq.minimum_magnitude, trt)
for block in block_splitter(rups, maxw * 1.02, rup_weight):
if manysites:
logging.info('%s: sending %d ruptures', model, len(block))
args = block, cmaker, sitecol, (None, None), ruptures_hdf5
smap.submit(args)
logging.info('Computing the GMFs')
return smap
# NB: save_tmp is passed in event_based_risk
[docs]def starmap_from_rups(func, oq, full_lt, sitecol, dstore, save_tmp=None):
"""
Submit the ruptures and apply `func` (event_based or ebrisk)
"""
try:
vs30 = sitecol.vs30
except ValueError: # in scenario test_case_14
pass
else:
if numpy.isnan(vs30).any():
raise ValueError('The vs30 is NaN, missing site model '
'or site parameter')
set_mags(oq, dstore)
rups = dstore['ruptures'][:]
logging.info('Reading {:_d} ruptures'.format(len(rups)))
logging.info('Affected sites ~%.0f per rupture, max=%.0f',
rups['nsites'].mean(), rups['nsites'].max())
allproxies = [RuptureProxy(rec) for rec in rups]
if "station_data" in oq.inputs:
trt = full_lt.trts[0]
proxy = allproxies[0]
proxy.geom = dstore['rupgeoms'][proxy['geom_id']]
rup = proxy.to_ebr(trt).rupture
station_df = dstore.read_df('station_data', 'site_id')
maxdist = (oq.maximum_distance_stations or
oq.maximum_distance['default'][-1][1])
station_data, station_sites = filter_stations(
station_df, sitecol.complete, rup, maxdist)
dstore['stations_considered'] = station_sites if station_sites else []
else:
station_data, station_sites = None, None
maxw = sum(rup_weight(p) for p in allproxies) / (
oq.concurrent_tasks or 1)
logging.info('maxw = {:_d}'.format(round(maxw)))
if station_data is not None:
# assume scenario with a single true rupture
rlzs_by_gsim = full_lt.get_rlzs_by_gsim(0)
cmaker = ContextMaker(trt, rlzs_by_gsim, oq)
cmaker.scenario = True
maxdist = oq.maximum_distance(cmaker.trt)
srcfilter = SourceFilter(sitecol.complete, maxdist)
computer = get_computer(
cmaker, proxy, srcfilter, station_data, station_sites)
G = len(cmaker.gsims)
M = len(cmaker.imts)
N = len(computer.sitecol)
size = 2 * G * M * N * N * 8 # tau, phi
msg = f'{G=} * {M=} * {humansize(N*N*8)} * 2'
logging.info('Requiring %s for tau, phi [%s]', humansize(size), msg)
if size > float(config.memory.conditioned_gmf_gb) * 1024**3:
raise ValueError(
f'The calculation is too large: {G=}, {M=}, {N=}. '
'You must reduce the number of sites i.e. maximum_distance')
mea, tau, phi = computer.get_mea_tau_phi(dstore.hdf5)
del proxy.geom # to reduce data transfer
dstore.swmr_on()
smap = parallel.Starmap(func, h5=dstore.hdf5)
if save_tmp:
save_tmp(smap.monitor)
# NB: for conditioned scenarios we are looping on a single trt
toml_gsims = []
for trt_smr, start, stop in dstore['trt_smr_start_stop']:
proxies = allproxies[start:stop]
trt = full_lt.trts[trt_smr // TWO24]
extra = sitecol.array.dtype.names
rlzs_by_gsim = full_lt.get_rlzs_by_gsim(trt_smr)
cmaker = ContextMaker(trt, rlzs_by_gsim, oq, extraparams=extra)
cmaker.min_mag = getdefault(oq.minimum_magnitude, trt)
for gsim in rlzs_by_gsim:
toml_gsims.append(gsim._toml)
if station_data is not None:
if parallel.oq_distribute() in ('zmq', 'slurm'):
logging.error('Conditioned scenarios are not meant to be run'
' on a cluster')
smap.share(mea=mea, tau=tau, phi=phi)
# producing slightly less than concurrent_tasks thanks to the 1.02
for block in block_splitter(proxies, maxw * 1.02, rup_weight):
args = block, cmaker, sitecol, (station_data, station_sites), dstore
smap.submit(args)
dstore['gsims'] = numpy.array(toml_gsims)
return smap
[docs]def set_mags(oq, dstore):
"""
Set the attribute oq.mags_by_trt
"""
if 'source_mags' in dstore:
# classical or event_based
oq.mags_by_trt = {
trt: python3compat.decode(dset[:])
for trt, dset in dstore['source_mags'].items()}
elif oq.ruptures_hdf5:
pass
elif 'ruptures' in dstore:
# scenario
trts = dstore['full_lt'].trts
ruptures = dstore['ruptures'][:]
dic = {}
for trti, trt in enumerate(trts):
rups = ruptures[ruptures['trt_smr'] == trti]
mags = numpy.unique(numpy.round(rups['mag'], 2))
dic[trt] = ['%.02f' % mag for mag in mags]
oq.mags_by_trt = dic
[docs]def compute_avg_gmf(gmf_df, weights, min_iml):
"""
:param gmf_df: a DataFrame with colums eid, sid, rlz, gmv...
:param weights: E weights associated to the realizations
:param min_iml: array of M minimum intensities
:returns: a dictionary site_id -> array of shape (2, M)
"""
dic = {}
E = len(weights)
C = len(min_iml)
for sid, df in gmf_df.groupby(gmf_df.index):
eid = df.pop('eid')
gmvs = numpy.zeros((E, C), F32)
gmvs[eid.to_numpy()] = df.to_numpy()
for c, mini in enumerate(min_iml):
gmvs[gmvs[:, c] < mini, c] = mini
dic[sid] = geom_avg_std(gmvs, weights)
return dic
[docs]def read_gsim_lt(oq):
# in impact mode the gsim_lt is read from the exposure.hdf5 file
if oq.impact and not oq.shakemap_uri:
if not oq.mosaic_model:
if oq.rupture_dict:
lon, lat = [oq.rupture_dict['lon'], oq.rupture_dict['lat']]
elif oq.rupture_xml:
hypo = readinput.get_rupture(oq).hypocenter
lon, lat = [hypo.x, hypo.y]
mosaic_models = get_close_mosaic_models(lon, lat, 5)
# NOTE: using the first mosaic model
oq.mosaic_model = mosaic_models[0]
if len(mosaic_models) > 1:
logging.info('Using the "%s" model' % oq.mosaic_model)
[expo_hdf5] = oq.inputs['exposure']
if oq.mosaic_model == '???':
raise ValueError(
'(%(lon)s, %(lat)s) is not covered by the mosaic!' %
oq.rupture_dict)
if oq.gsim != '[FromFile]':
raise ValueError(
'In Aristotle mode the gsim can not be specified in'
' the job.ini: %s' % oq.gsim)
if oq.tectonic_region_type == '*':
raise ValueError(
'The tectonic_region_type parameter must be specified')
gsim_lt = logictree.GsimLogicTree.from_hdf5(
expo_hdf5, oq.mosaic_model, oq.tectonic_region_type.encode('utf8'))
else:
gsim_lt = readinput.get_gsim_lt(oq)
return gsim_lt
[docs]@base.calculators.add('event_based', 'scenario')
class EventBasedCalculator(base.HazardCalculator):
"""
Event based PSHA calculator generating the ground motion fields and
the hazard curves from the ruptures, depending on the configuration
parameters.
"""
core_task = event_based
is_stochastic = True
accept_precalc = ['event_based', 'ebrisk', 'event_based_risk']
[docs] def init(self):
if self.oqparam.cross_correl.__class__.__name__ == 'GodaAtkinson2009':
logging.warning(
'The truncation_level param is ignored with GodaAtkinson2009')
if hasattr(self, 'csm'):
self.check_floating_spinning()
if hasattr(self.oqparam, 'maximum_distance'):
self.srcfilter = self.src_filter()
else:
self.srcfilter = nofilter
if not self.datastore.parent:
self.datastore.create_dset('ruptures', rupture_dt)
self.datastore.create_dset('rupgeoms', hdf5.vfloat32)
[docs] def counting_ruptures(self):
"""
Sets src.num_ruptures and src.offset
"""
sources = self.csm.get_sources()
logging.info('Counting the ruptures in the CompositeSourceModel')
self.datastore.swmr_on()
with self.monitor('counting ruptures', measuremem=True):
nrups = parallel.Starmap( # weighting the heavy sources
count_ruptures, [(src,) for src in sources
if src.code in b'AMSC'],
h5=self.datastore.hdf5,
progress=logging.debug).reduce()
# NB: multifault sources must be considered light to avoid a large
# data transfer, even if .count_ruptures can be slow
for src in sources:
try:
src.num_ruptures = nrups[src.source_id]
except KeyError: # light sources
src.num_ruptures = src.count_ruptures()
src.weight = src.num_ruptures
self.csm.fix_src_offset() # NB: must be AFTER count_ruptures
maxweight = sum(sg.weight for sg in self.csm.src_groups) / (
self.oqparam.concurrent_tasks or 1)
return maxweight
[docs] def build_events_from_sources(self):
"""
Prefilter the composite source model and store the source_info
"""
oq = self.oqparam
maxweight = self.counting_ruptures()
eff_ruptures = AccumDict(accum=0) # grp_id => potential ruptures
source_data = AccumDict(accum=[])
allargs = []
srcfilter = self.srcfilter
if 'geometry' in oq.inputs:
fname = oq.inputs['geometry']
with fiona.open(fname) as f:
model_geom = geometry.shape(f[0].geometry)
elif oq.mosaic_model: # 3-letter mosaic model
mosaic_df = readinput.read_mosaic_df(buffer=0).set_index('code')
mmodel = 'CAN' if oq.mosaic_model == 'CND' else oq.mosaic_model
model_geom = mosaic_df.loc[mmodel].geom
logging.info('Building ruptures')
g_index = 0
for sg_id, sg in enumerate(self.csm.src_groups):
if not sg.sources:
continue
rgb = self.full_lt.get_rlzs_by_gsim(sg.sources[0].trt_smr)
cmaker = ContextMaker(sg.trt, rgb, oq)
cmaker.gid = numpy.arange(g_index, g_index + len(rgb))
g_index += len(rgb)
cmaker.model = oq.mosaic_model or '???'
if oq.mosaic_model or 'geometry' in oq.inputs:
cmaker.model_geom = model_geom
for src_group in sg.split(maxweight):
allargs.append((src_group, cmaker, srcfilter.sitecol))
self.datastore.swmr_on()
smap = parallel.Starmap(
sample_ruptures, allargs, h5=self.datastore.hdf5)
mon = self.monitor('saving ruptures')
self.nruptures = 0 # estimated classical ruptures within maxdist
t0 = time.time()
tot_ruptures = 0
filtered_ruptures = 0
for dic in smap:
# NB: dic should be a dictionary, but when the calculation dies
# for an OOM it can become None, thus giving a very confusing error
if dic is None:
raise MemoryError('You ran out of memory!')
rup_array = dic['rup_array']
tot_ruptures += len(rup_array)
if len(rup_array) == 0:
continue
geom = rup_array.geom
filtered_ruptures += len(rup_array)
if dic['source_data']:
source_data += dic['source_data']
if dic['eff_ruptures']:
eff_ruptures += dic['eff_ruptures']
with mon:
self.nruptures += len(rup_array)
# NB: the ruptures will we reordered and resaved later
hdf5.extend(self.datastore['ruptures'], rup_array)
hdf5.extend(self.datastore['rupgeoms'], geom)
t1 = time.time()
logging.info(f'Generated {filtered_ruptures}/{tot_ruptures} ruptures,'
f' stored in {t1 - t0} seconds')
if len(self.datastore['ruptures']) == 0:
raise RuntimeError('No ruptures were generated, perhaps the '
'effective investigation time is too short')
# don't change the order of the 3 things below!
self.store_source_info(source_data)
self.store_rlz_info(eff_ruptures)
imp = RuptureImporter(self.datastore)
with self.monitor('saving ruptures and events'):
imp.import_rups_events(self.datastore.getitem('ruptures')[()])
[docs] def agg_dicts(self, acc, result):
"""
:param acc: accumulator dictionary
:param result: an AccumDict with events, ruptures and gmfs
"""
if result is None: # instead of a dict
raise MemoryError('You ran out of memory!')
sav_mon = self.monitor('saving gmfs')
primary = self.oqparam.get_primary_imtls()
sec_imts = self.oqparam.sec_imts
with sav_mon:
gmfdata = result.pop('gmfdata')
if len(gmfdata):
df = pandas.DataFrame(gmfdata)
dset = self.datastore['gmf_data/sid']
times = result.pop('times')
hdf5.extend(self.datastore['gmf_data/rup_info'], times)
if self.N >= SLICE_BY_EVENT_NSITES:
sbe = build_slice_by_event(
df.eid.to_numpy(), self.offset)
hdf5.extend(self.datastore['gmf_data/slice_by_event'], sbe)
hdf5.extend(dset, df.sid.to_numpy())
hdf5.extend(self.datastore['gmf_data/eid'], df.eid.to_numpy())
for imt in primary:
hdf5.extend(self.datastore[f'gmf_data/{imt}'],
df[imt].to_numpy())
for sec_imt in sec_imts:
hdf5.extend(self.datastore[f'gmf_data/{sec_imt}'],
df[sec_imt].to_numpy())
sig_eps = result.pop('sig_eps')
hdf5.extend(self.datastore['gmf_data/sigma_epsilon'], sig_eps)
self.offset += len(df)
# optionally save mea_tau_phi
mtp = result.pop('mea_tau_phi', None)
if mtp:
for col, arr in mtp.items():
hdf5.extend(self.datastore[f'mea_tau_phi/{col}'], arr)
return acc
def _read_scenario_ruptures(self):
oq = self.oqparam
gsim_lt = read_gsim_lt(oq)
trts = list(gsim_lt.values)
if (str(gsim_lt.branches[0].gsim) == '[FromFile]'
and 'gmfs' not in oq.inputs and not oq.shakemap_uri):
raise InvalidFile('%s: missing gsim or gsim_logic_tree_file' %
oq.inputs['job_ini'])
G = gsim_lt.get_num_paths()
if oq.calculation_mode.startswith('scenario'):
ngmfs = oq.number_of_ground_motion_fields
if oq.rupture_dict or oq.rupture_xml:
# check the number of branchsets
bsets = len(gsim_lt._ltnode)
if bsets > 1:
raise InvalidFile(
'%s for a scenario calculation must contain a single '
'branchset, found %d!' % (oq.inputs['job_ini'], bsets))
[(trt_smr, rlzs_by_gsim)] = gsim_lt.get_rlzs_by_gsim_dic().items()
trt = trts[trt_smr // TWO24]
rup = readinput.get_rupture(oq)
# If the hypocenter is outside the rupture surface, relocate it
# to the middle of the surface (in case, it logs a warning
# indicating the original and the translated coordinates)
rup, _warn = adjust_hypocenter(rup)
oq.mags_by_trt = {trt: [magstr(rup.mag)]}
self.cmaker = ContextMaker(trt, rlzs_by_gsim, oq)
if self.N > oq.max_sites_disagg: # many sites, split rupture
ebrs = []
for i in range(ngmfs):
ebr = EBRupture(rup, 0, 0, G, i, e0=i * G)
ebr.seed = oq.ses_seed + i
ebrs.append(ebr)
else: # keep a single rupture with a big occupation number
ebrs = [EBRupture(rup, 0, 0, G * ngmfs, 0)]
ebrs[0].seed = oq.ses_seed
srcfilter = SourceFilter(self.sitecol, oq.maximum_distance(trt))
aw = get_rup_array(ebrs, srcfilter)
if len(aw) == 0:
raise RuntimeError(
'The rupture is too far from the sites! Please check the '
'maximum_distance and the position of the rupture')
elif oq.inputs['rupture_model'].endswith('.csv'):
aw = get_ruptures_aw(oq.inputs['rupture_model'])
if len(gsim_lt.values) == 1: # fix for scenario_damage/case_12
aw['trt_smr'] = 0 # a single TRT
if oq.calculation_mode.startswith('scenario'):
# rescale n_occ by ngmfs and nrlzs
aw['n_occ'] *= ngmfs * gsim_lt.get_num_paths()
else:
raise InvalidFile("Something wrong in %s" % oq.inputs['job_ini'])
rup_array = aw.array
hdf5.extend(self.datastore['rupgeoms'], aw.geom)
if len(rup_array) == 0:
raise RuntimeError(
'There are no sites within the maximum_distance'
' of %s km from the rupture' % oq.maximum_distance(
rup.tectonic_region_type)(rup.mag))
fake = logictree.FullLogicTree.fake(gsim_lt)
self.datastore['full_lt'] = fake
self.store_rlz_info({}) # store weights
self.save_params()
imp = RuptureImporter(self.datastore)
imp.import_rups_events(rup_array)
[docs] def execute(self):
oq = self.oqparam
dstore = self.datastore
if oq.impact and oq.shakemap_uri:
# when calling `oqi usgs_id`
base.store_gmfs_from_shakemap(self, self.sitecol, self.assetcol)
return {}
elif 'gmf_data' in dstore:
# already computed
return {}
E = getattr(oq, 'number_of_ground_motion_fields', None)
if oq.ground_motion_fields and oq.min_iml.sum() == 0:
logging.warning('The GMFs are not filtered: '
'you may want to set a minimum_intensity')
elif oq.minimum_intensity:
logging.info('minimum_intensity=%s', oq.minimum_intensity)
else:
logging.info('min_iml=%s', oq.min_iml)
self.offset = 0
if oq.hazard_calculation_id: # from ruptures
dstore.parent = datastore.read(oq.hazard_calculation_id)
self.full_lt = dstore.parent['full_lt'].init()
set_mags(oq, dstore)
elif hasattr(self, 'csm'): # from sources
set_mags(oq, dstore)
self.build_events_from_sources()
if (oq.ground_motion_fields is False and
oq.hazard_curves_from_gmfs is False):
return {}
elif 'grid_url' in oq.shakemap_uri:
base.store_gmfs_from_shakemap(self, self.sitecol, self.assetcol)
return {}
elif (not oq.rupture_dict and not oq.shakemap_uri
and 'rupture_model' not in oq.inputs):
logging.warning(
'There is no rupture_model, the calculator will just '
'import data without performing any calculation')
fake = logictree.FullLogicTree.fake()
dstore['full_lt'] = fake # needed to expose the outputs
dstore['weights'] = [1.]
return {}
elif oq.ruptures_hdf5:
with hdf5.File(oq.ruptures_hdf5) as r:
E = len(r['events'])
else: # scenario
if 'rupture_model' in oq.inputs or oq.rupture_dict:
self._read_scenario_ruptures()
if (oq.ground_motion_fields is False and
oq.hazard_curves_from_gmfs is False):
return {}
if oq.ground_motion_fields and 'gmf_data' not in dstore:
# if GMFs not already created by store_gmfs_from_shakemap
prim_imts = oq.get_primary_imtls()
base.create_gmf_data(dstore, prim_imts, oq.sec_imts,
E=E, R=oq.number_of_logic_tree_samples)
dstore.create_dset('gmf_data/sigma_epsilon', sig_eps_dt(oq.imtls))
dstore.create_dset('gmf_data/rup_info', rup_dt)
if self.N >= SLICE_BY_EVENT_NSITES:
dstore.create_dset('gmf_data/slice_by_event', slice_dt)
# event_based in parallel
if oq.ruptures_hdf5:
smap = starmap_from_rups_hdf5(oq, self.sitecol, dstore)
else:
smap = starmap_from_rups(
event_based, oq, self.full_lt, self.sitecol, dstore)
acc = smap.reduce(self.agg_dicts)
if 'gmf_data' not in dstore:
return acc
if oq.ground_motion_fields:
with self.monitor('saving avg_gmf', measuremem=True):
self.save_avg_gmf()
return acc
[docs] def save_avg_gmf(self):
"""
Compute and save avg_gmf, unless there are too many GMFs
"""
size = self.datastore.getsize('gmf_data')
maxsize = self.oqparam.gmf_max_gb * 1024 ** 3
logging.info(f'Stored {humansize(size)} of GMFs')
if size > maxsize:
logging.warning(
f'There are more than {humansize(maxsize)} of GMFs,'
' not computing avg_gmf')
return
rlzs = self.datastore['events'][:]['rlz_id']
self.weights = self.datastore['weights'][:][rlzs]
gmf_df = self.datastore.read_df('gmf_data', 'sid')
rel_events = gmf_df.eid.unique()
e = len(rel_events)
if e == 0:
raise RuntimeError(
'No GMFs were generated, perhaps they were '
'all below the minimum_intensity threshold')
elif e < len(self.datastore['events']):
self.datastore['relevant_events'] = rel_events
logging.info('Stored {:_d} relevant event IDs'.format(e))
# really compute and store the avg_gmf
M = len(self.oqparam.imtls)
C = len(self.oqparam.all_imts())
avg_gmf = numpy.zeros((2, len(self.sitecol.complete), C), F32)
min_iml = numpy.ones(C) * 1E-10
min_iml[:M] = self.oqparam.min_iml
for sid, avgstd in compute_avg_gmf(
gmf_df, self.weights, min_iml).items():
avg_gmf[:, sid] = avgstd
self.datastore['avg_gmf'] = avg_gmf
# make avg_gmf plots only if running via the webui
if os.environ.get('OQ_APPLICATION_MODE') == 'ARISTOTLE':
imts = list(self.oqparam.imtls)
ex = Extractor(self.datastore.calc_id)
for imt in imts:
plt = plot_avg_gmf(ex, imt)
bio = io.BytesIO()
plt.savefig(bio, format='png', bbox_inches='tight')
fig_path = f'png/avg_gmf-{imt}.png'
logging.info(f'Saving {fig_path} into the datastore')
self.datastore[fig_path] = Image.open(bio)
[docs] def post_execute(self, dummy):
oq = self.oqparam
if not oq.ground_motion_fields or 'gmf_data' not in self.datastore:
return
# check seed dependency unless the number of GMFs is huge
imt0 = list(oq.imtls)[0]
size = self.datastore.getsize(f'gmf_data/{imt0}')
if 'gmf_data' in self.datastore and size < 4E9 and not oq.ruptures_hdf5:
# TODO: check why there is an error for ruptures_hdf5
logging.info('Checking stored GMFs')
msg = views.view('extreme_gmvs', self.datastore)
logging.info(msg)
if self.datastore.parent:
self.datastore.parent.open('r')
if oq.hazard_curves_from_gmfs:
maxsize = int(config.memory.gmf_data_rows)
if size > maxsize:
msg = 'gmf_data has {:_d} rows > {:_d}'.format(size, maxsize)
raise RuntimeError(f'{msg}: too big to compute the hcurves')
logging.info('Building hazard curves and possibly maps')
build_hcurves(self.datastore)
if oq.compare_with_classical: # compute classical curves
export_dir = os.path.join(oq.export_dir, 'cl')
if not os.path.exists(export_dir):
os.makedirs(export_dir)
oq.export_dir = export_dir
oq.calculation_mode = 'classical'
with logs.init(vars(oq)) as log:
self.cl = ClassicalCalculator(oq, log.calc_id)
# TODO: perhaps it is possible to avoid reprocessing the
# source model, however usually this is quite fast and
# does not dominate the computation
self.cl.run()
expose_outputs(self.cl.datastore)
all = slice(None)
for imt in oq.imtls:
cl_mean_curves = get_mean_curve(
self.datastore, imt, all)
eb_mean_curves = get_mean_curve(
self.datastore, imt, all)
self.rdiff, index = util.max_rel_diff_index(
cl_mean_curves, eb_mean_curves)
logging.warning(
'Relative difference with the classical '
'mean curves: %d%% at site index %d, imt=%s',
self.rdiff * 100, index, imt)
