# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (C) 2012-2022 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# OpenQuake is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Affero General Public License for more details.
#
# You should have received a copy of the GNU Affero General Public License
# along with OpenQuake. If not, see <http://www.gnu.org/licenses/>.
"""
This module includes the scientific API of the oq-risklib
"""
import ast
import copy
import bisect
import itertools
import collections
from functools import lru_cache
import numpy
import pandas
from numpy.testing import assert_equal
from scipy import interpolate, stats
from openquake.baselib import hdf5
F64 = numpy.float64
F32 = numpy.float32
U32 = numpy.uint32
U64 = numpy.uint64
U16 = numpy.uint16
U8 = numpy.uint8
TWO32 = 2 ** 32
KNOWN_CONSEQUENCES = ['loss', 'losses', 'collapsed', 'injured',
'fatalities', 'homeless']
LOSSTYPE = numpy.array('''\
business_interruption contents nonstructural structural
occupants occupants_day occupants_night occupants_transit
structural+nonstructural structural+contents nonstructural+contents
structural+nonstructural+contents
structural+nonstructural_ins structural+contents_ins nonstructural+contents_ins
structural+nonstructural+contents_ins
structural_ins nonstructural_ins reinsurance'''.split())
TOTLOSSES = [lt for lt in LOSSTYPE if '+' in lt]
LTI = {lt: i for i, lt in enumerate(LOSSTYPE)}
[docs]def pairwise(iterable):
"s -> (s0,s1), (s1,s2), (s2, s3), ..."
a, b = itertools.tee(iterable)
# b ahead one step; if b is empty do not raise StopIteration
next(b, None)
return zip(a, b) # if a is empty will return an empty iter
[docs]def fine_graining(points, steps):
"""
:param points: a list of floats
:param int steps: expansion steps (>= 2)
>>> fine_graining([0, 1], steps=0)
[0, 1]
>>> fine_graining([0, 1], steps=1)
[0, 1]
>>> fine_graining([0, 1], steps=2)
array([0. , 0.5, 1. ])
>>> fine_graining([0, 1], steps=3)
array([0. , 0.33333333, 0.66666667, 1. ])
>>> fine_graining([0, 0.5, 0.7, 1], steps=2)
array([0. , 0.25, 0.5 , 0.6 , 0.7 , 0.85, 1. ])
N points become S * (N - 1) + 1 points with S > 0
"""
if steps < 2:
return points
ls = numpy.concatenate([numpy.linspace(x, y, num=steps + 1)[:-1]
for x, y in pairwise(points)])
return numpy.concatenate([ls, [points[-1]]])
# sampling functions
[docs]class Sampler(object):
def __init__(self, distname, rng, lratios=(), cols=None):
self.distname = distname
self.rng = rng
self.arange = numpy.arange(len(lratios)) # for the PM distribution
self.lratios = lratios # for the PM distribution
self.cols = cols # for the PM distribution
[docs] def get_losses(self, df, covs):
vals = df['val'].to_numpy()
if not self.rng or not covs: # fast lane
losses = vals * df['mean'].to_numpy()
else: # slow lane
losses = vals * getattr(self, 'sample' + self.distname)(df)
return losses
[docs] def sampleLN(self, df):
means = df['mean'].to_numpy()
covs = df['cov'].to_numpy()
eids = df['eid'].to_numpy()
return self.rng.lognormal(eids, means, covs)
[docs] def sampleBT(self, df):
means = df['mean'].to_numpy()
covs = df['cov'].to_numpy()
eids = df['eid'].to_numpy()
return self.rng.beta(eids, means, covs)
[docs] def samplePM(self, df):
eids = df['eid'].to_numpy()
allprobs = df[self.cols].to_numpy()
pmf = []
for eid, probs in zip(eids, allprobs): # probs by asset
if probs.sum() == 0: # oq-risk-tests/case_1g
# means are zeros for events below the threshold
pmf.append(0)
else:
pmf.append(stats.rv_discrete(
name='pmf', values=(self.arange, probs),
seed=self.rng.master_seed + eid).rvs())
return self.lratios[pmf]
#
# Input models
#
[docs]class VulnerabilityFunction(object):
dtype = numpy.dtype([('iml', F64), ('loss_ratio', F64), ('cov', F64)])
seed = None # to be overridden
kind = 'vulnerability'
def __init__(self, vf_id, imt, imls, mean_loss_ratios, covs=None,
distribution="LN"):
"""
A wrapper around a probabilistic distribution function
(currently, the Log-normal ("LN") and Beta ("BT")
distributions are supported amongst the continuous probability
distributions. For specifying a discrete probability
distribution refer to the class VulnerabilityFunctionWithPMF.
It is meant to be pickeable to allow distributed computation.
The only important method is `.__call__`, which applies
the vulnerability function to a given set of ground motion
fields and epsilons and return a loss matrix with N x R
elements.
:param str vf_id: Vulnerability Function ID
:param str imt: Intensity Measure Type as a string
:param list imls: Intensity Measure Levels for the
vulnerability function. All values must be >= 0.0, values
must be arranged in ascending order with no duplicates
:param list mean_loss_ratios: Mean Loss ratio values, equal in
length to imls, where value >= 0.
:param list covs: Coefficients of Variation. Equal in length
to mean loss ratios. All values must be >= 0.0.
:param str distribution_name: The probabilistic distribution
related to this function.
"""
self.id = vf_id
self.imt = imt
self._check_vulnerability_data(
imls, mean_loss_ratios, covs, distribution)
self.imls = numpy.array(imls)
self.mean_loss_ratios = numpy.array(mean_loss_ratios)
self.retro = False
if covs is not None:
self.covs = numpy.array(covs)
else:
self.covs = numpy.zeros(self.imls.shape)
for lr, cov in zip(self.mean_loss_ratios, self.covs):
if lr == 0 and cov > 0:
msg = ("It is not valid to define a mean loss ratio = 0 "
"with a corresponding coefficient of variation > 0")
raise ValueError(msg)
if cov < 0:
raise ValueError(
'Found a negative coefficient of variation in %s' %
self.covs)
if distribution == 'BT':
if lr == 0: # possible with cov == 0
pass
elif lr > 1:
raise ValueError(
'The meanLRs must be below 1, got %s' % lr)
elif cov ** 2 > 1 / lr - 1:
# see https://github.com/gem/oq-engine/issues/4841
raise ValueError(
'The coefficient of variation %s > %s does not '
'satisfy the requirement 0 < sig < sqrt[mu × (1 - mu)]'
' in %s' % (cov, numpy.sqrt(1 / lr - 1), self))
self.distribution_name = distribution
[docs] def init(self):
# called by CompositeRiskModel and by __setstate__
self.covs = F64(self.covs)
self.mean_loss_ratios = F64(self.mean_loss_ratios)
self._stddevs = self.covs * self.mean_loss_ratios
self._mlr_i1d = interpolate.interp1d(self.imls, self.mean_loss_ratios)
self._covs_i1d = interpolate.interp1d(self.imls, self.covs)
[docs] def interpolate(self, gmf_df, col):
"""
:param gmf_df:
DataFrame of GMFs
:returns:
DataFrame of interpolated loss ratios and covs
"""
gmvs = gmf_df[col].to_numpy()
dic = dict(eid=gmf_df.eid.to_numpy(),
mean=numpy.zeros(len(gmvs)),
cov=numpy.zeros(len(gmvs)))
# gmvs are clipped to max(iml)
gmvs_curve = numpy.piecewise(
gmvs, [gmvs > self.imls[-1]], [self.imls[-1], lambda x: x])
ok = gmvs_curve >= self.imls[0] # indices over the minimum
curve_ok = gmvs_curve[ok]
dic['mean'][ok] = self._mlr_i1d(curve_ok)
dic['cov'][ok] = self._cov_for(curve_ok)
return pandas.DataFrame(dic, gmf_df.sid)
[docs] def survival(self, loss_ratio, mean, stddev):
"""
Compute the survival probability based on the underlying
distribution.
"""
if self.distribution_name == 'LN':
# scipy does not handle correctly the limit case stddev = 0.
# In that case, when `mean` > 0 the survival function
# approaches to a step function, otherwise (`mean` == 0) we
# returns 0
if stddev == 0:
return numpy.piecewise(
loss_ratio, [loss_ratio > mean or not mean], [0, 1])
variance = stddev ** 2.0
sigma = numpy.sqrt(numpy.log((variance / mean ** 2.0) + 1.0))
mu = mean ** 2.0 / numpy.sqrt(variance + mean ** 2.0)
return stats.lognorm.sf(loss_ratio, sigma, scale=mu)
elif self.distribution_name == 'BT':
return stats.beta.sf(loss_ratio, *_alpha_beta(mean, stddev))
else:
raise NotImplementedError(self.distribution_name)
def __call__(self, asset_df, gmf_df, col, rng=None, minloss=0):
"""
:param asset_df: a DataFrame with A assets
:param gmf_df: a DataFrame of GMFs for the given assets
:param col: GMF column associated to the IMT (i.e. "gmv_0")
:param rng: a MultiEventRNG or None
:returns: a DataFrame with columns eid, aid, loss
"""
if asset_df is None: # in the tests
asset_df = pandas.DataFrame(dict(aid=0, val=1), [0])
ratio_df = self.interpolate(gmf_df, col) # really fast
if self.distribution_name == 'PM': # special case
lratios = F64(self.loss_ratios)
cols = [col for col in ratio_df.columns if isinstance(col, int)]
else:
lratios = ()
cols = None
df = ratio_df.join(asset_df, how='inner')
sampler = Sampler(self.distribution_name, rng, lratios, cols)
covs = not hasattr(self, 'covs') or self.covs.any()
losses = sampler.get_losses(df, covs)
ok = losses > minloss
if self.distribution_name == 'PM': # special case
variances = numpy.zeros(len(losses))
else:
variances = (losses * df['cov'].to_numpy())**2
return pandas.DataFrame(dict(eid=df.eid[ok], aid=df.aid[ok],
variance=variances[ok], loss=losses[ok]))
[docs] def strictly_increasing(self):
"""
:returns:
a new vulnerability function that is strictly increasing.
It is built by removing piece of the function where the mean
loss ratio is constant.
"""
imls, mlrs, covs = [], [], []
previous_mlr = None
for i, mlr in enumerate(self.mean_loss_ratios):
if previous_mlr == mlr:
continue
else:
mlrs.append(mlr)
imls.append(self.imls[i])
covs.append(self.covs[i])
previous_mlr = mlr
return self.__class__(
self.id, self.imt, imls, mlrs, covs, self.distribution_name)
[docs] def mean_loss_ratios_with_steps(self, steps):
"""
Split the mean loss ratios, producing a new set of loss ratios. The new
set of loss ratios always includes 0.0 and 1.0
:param int steps:
the number of steps we make to go from one loss
ratio to the next. For example, if we have [0.5, 0.7]::
steps = 1 produces [0.0, 0.5, 0.7, 1]
steps = 2 produces [0.0, 0.25, 0.5, 0.6, 0.7, 0.85, 1]
steps = 3 produces [0.0, 0.17, 0.33, 0.5, 0.57, 0.63,
0.7, 0.8, 0.9, 1]
"""
loss_ratios = self.mean_loss_ratios
if min(loss_ratios) > 0.0:
# prepend with a zero
loss_ratios = numpy.concatenate([[0.0], loss_ratios])
if max(loss_ratios) < 1.0:
# append a 1.0
loss_ratios = numpy.concatenate([loss_ratios, [1.0]])
return fine_graining(loss_ratios, steps)
def _cov_for(self, imls):
"""
Clip `imls` to the range associated with the support of the
vulnerability function and returns the corresponding
covariance values by linear interpolation. For instance
if the range is [0.005, 0.0269] and the imls are
[0.0049, 0.006, 0.027], the clipped imls are
[0.005, 0.006, 0.0269].
"""
return self._covs_i1d(
numpy.piecewise(
imls,
[imls > self.imls[-1], imls < self.imls[0]],
[self.imls[-1], self.imls[0], lambda x: x]))
def __getstate__(self):
return (self.id, self.imt, self.imls, self.mean_loss_ratios,
self.covs, self.distribution_name, self.retro)
def __setstate__(self, state):
self.id = state[0]
self.imt = state[1]
self.imls = state[2]
self.mean_loss_ratios = state[3]
self.covs = state[4]
self.distribution_name = state[5]
self.retro = state[6]
self.init()
def _check_vulnerability_data(self, imls, loss_ratios, covs, distribution):
assert_equal(imls, sorted(set(imls)))
assert all(x >= 0.0 for x in imls)
assert covs is None or len(covs) == len(imls)
assert len(loss_ratios) == len(imls)
assert all(x >= 0.0 for x in loss_ratios)
assert covs is None or all(x >= 0.0 for x in covs)
assert distribution in ["LN", "BT", "PM"]
[docs] @lru_cache()
def loss_ratio_exceedance_matrix(self, loss_ratios):
"""
Compute the LREM (Loss Ratio Exceedance Matrix).
"""
# LREM has number of rows equal to the number of loss ratios
# and number of columns equal to the number of imls
lrem = numpy.empty((len(loss_ratios), len(self.imls)))
for row, loss_ratio in enumerate(loss_ratios):
for col, (mean_loss_ratio, stddev) in enumerate(
zip(self.mean_loss_ratios, self._stddevs)):
lrem[row, col] = self.survival(
loss_ratio, mean_loss_ratio, stddev)
return lrem
[docs] @lru_cache()
def mean_imls(self):
"""
Compute the mean IMLs (Intensity Measure Level)
for the given vulnerability function.
:param vulnerability_function: the vulnerability function where
the IMLs (Intensity Measure Level) are taken from.
:type vuln_function:
:py:class:`openquake.risklib.vulnerability_function.\
VulnerabilityFunction`
"""
return numpy.array(
[max(0, self.imls[0] - (self.imls[1] - self.imls[0]) / 2.)] +
[numpy.mean(pair) for pair in pairwise(self.imls)] +
[self.imls[-1] + (self.imls[-1] - self.imls[-2]) / 2.])
def __repr__(self):
return '<VulnerabilityFunction(%s, %s)>' % (self.id, self.imt)
[docs]class VulnerabilityFunctionWithPMF(VulnerabilityFunction):
"""
Vulnerability function with an explicit distribution of probabilities
:param str vf_id: vulnerability function ID
:param str imt: Intensity Measure Type
:param imls: intensity measure levels (L)
:param ratios: an array of mean ratios (M)
:param probs: a matrix of probabilities of shape (M, L)
"""
def __init__(self, vf_id, imt, imls, loss_ratios, probs):
self.id = vf_id
self.imt = imt
self.retro = False
self._check_vulnerability_data(imls, loss_ratios, probs)
self.imls = imls
self.loss_ratios = loss_ratios
self.probs = probs
self.distribution_name = "PM"
# to be set in .init(), called also by __setstate__
(self._probs_i1d, self.distribution) = None, None
self.init()
ls = [('iml', F32)] + [('prob-%s' % lr, F32) for lr in loss_ratios]
self._dtype = numpy.dtype(ls)
[docs] def init(self):
self._probs_i1d = interpolate.interp1d(self.imls, self.probs)
def __getstate__(self):
return (self.id, self.imt, self.imls, self.loss_ratios,
self.probs, self.distribution_name, self.retro)
def __setstate__(self, state):
self.id = state[0]
self.imt = state[1]
self.imls = state[2]
self.loss_ratios = state[3]
self.probs = state[4]
self.distribution_name = state[5]
self.retro = state[6]
self.init()
def _check_vulnerability_data(self, imls, loss_ratios, probs):
assert all(x >= 0.0 for x in imls)
assert all(x >= 0.0 for x in loss_ratios)
assert all([1.0 >= x >= 0.0 for x in y] for y in probs)
assert probs.shape[0] == len(loss_ratios)
assert probs.shape[1] == len(imls)
# MN: in the test gmvs_curve is of shape (5,), self.probs of shape (7, 8)
# self.imls of shape (8,) and the returned means have shape (5, 7)
[docs] def interpolate(self, gmf_df, col):
"""
:param gmvs:
DataFrame of GMFs
:param col: name of the column to consider
:returns:
DataFrame of interpolated probabilities
"""
# gmvs are clipped to max(iml)
M = len(self.probs)
gmvs = gmf_df[col].to_numpy()
dic = {m: numpy.zeros_like(gmvs) for m in range(M)}
dic['eid'] = gmf_df.eid.to_numpy()
gmvs_curve = numpy.piecewise(
gmvs, [gmvs > self.imls[-1]], [self.imls[-1], lambda x: x])
ok = gmvs_curve >= self.imls[0] # indices over the minimum
for m, probs in enumerate(self._probs_i1d(gmvs_curve[ok])):
dic[m][ok] = probs
return pandas.DataFrame(dic, gmf_df.sid)
[docs] @lru_cache()
def loss_ratio_exceedance_matrix(self, loss_ratios):
"""
Compute the LREM (Loss Ratio Exceedance Matrix).
Required for the Classical Risk and BCR Calculators.
Currently left unimplemented as the PMF format is used only for the
Scenario and Event Based Risk Calculators.
:param int steps:
Number of steps between loss ratios.
"""
# TODO: to be implemented if the classical risk calculator
# needs to support the pmf vulnerability format
def __repr__(self):
return '<VulnerabilityFunctionWithPMF(%s, %s)>' % (self.id, self.imt)
# this is meant to be instantiated by riskmodels.get_risk_functions
[docs]class VulnerabilityModel(dict):
"""
Container for a set of vulnerability functions. You can access each
function given the IMT and taxonomy with the square bracket notation.
:param str id: ID of the model
:param str assetCategory: asset category (i.e. buildings, population)
:param str lossCategory: loss type (i.e. structural, contents, ...)
All such attributes are None for a vulnerability model coming from a
NRML 0.4 file.
"""
def __init__(self, id=None, assetCategory=None, lossCategory=None):
self.id = id
self.assetCategory = assetCategory
self.lossCategory = lossCategory
def __repr__(self):
return '<%s %s %s>' % (
self.__class__.__name__, self.lossCategory, sorted(self))
# ############################## fragility ############################### #
[docs]class FragilityFunctionContinuous(object):
kind = 'fragility'
def __init__(self, limit_state, mean, stddev, minIML, maxIML, nodamage=0):
self.limit_state = limit_state
self.mean = mean
self.stddev = stddev
self.minIML = minIML
self.maxIML = maxIML
self.no_damage_limit = nodamage
def __call__(self, imls):
"""
Compute the Probability of Exceedance (PoE) for the given
Intensity Measure Levels (IMLs).
"""
# it is essentially to make a copy of the intensity measure levels,
# otherwise the minIML feature in continuous fragility functions will
# change the levels, thus breaking case_master for OQ_DISTRIBUTE=no
if self.minIML or self.maxIML:
imls = numpy.array(imls)
variance = self.stddev ** 2.0
sigma = numpy.sqrt(numpy.log(
(variance / self.mean ** 2.0) + 1.0))
mu = self.mean ** 2.0 / numpy.sqrt(
variance + self.mean ** 2.0)
if self.maxIML:
imls[imls > self.maxIML] = self.maxIML
if self.minIML:
imls[imls < self.minIML] = self.minIML
result = stats.lognorm.cdf(imls, sigma, scale=mu)
if self.no_damage_limit:
result[imls <= self.no_damage_limit] = 0
return result
def __repr__(self):
return '<%s(%s, %s, %s)>' % (
self.__class__.__name__, self.limit_state, self.mean, self.stddev)
[docs]class FragilityFunctionDiscrete(object):
kind = 'fragility'
def __init__(self, limit_state, imls, poes, no_damage_limit=None):
self.limit_state = limit_state
self.imls = imls
self.poes = poes
if len(imls) != len(poes):
raise ValueError('%s: %d levels but %d poes' % (
limit_state, len(imls), len(poes)))
self._interp = None
self.no_damage_limit = no_damage_limit
@property
def interp(self):
if self._interp is not None:
return self._interp
self._interp = interpolate.interp1d(self.imls, self.poes,
bounds_error=False)
return self._interp
def __call__(self, imls):
"""
Compute the Probability of Exceedance (PoE) for the given
Intensity Measure Levels (IMLs).
"""
highest_iml = self.imls[-1]
imls = numpy.array(imls)
if imls.sum() == 0.0:
return numpy.zeros_like(imls)
imls[imls > highest_iml] = highest_iml
result = self.interp(imls)
if self.no_damage_limit:
result[imls < self.no_damage_limit] = 0
return result
# so that the curve is pickeable
def __getstate__(self):
return dict(limit_state=self.limit_state,
poes=self.poes, imls=self.imls, _interp=None,
no_damage_limit=self.no_damage_limit)
def __eq__(self, other):
return (self.poes == other.poes and self.imls == other.imls and
self.no_damage_limit == other.no_damage_limit)
def __ne__(self, other):
return not self == other
def __repr__(self):
return '<%s(%s, %s, %s)>' % (
self.__class__.__name__, self.limit_state, self.imls, self.poes)
[docs]class FragilityFunctionList(list):
"""
A list of fragility functions with common attributes; there is a
function for each limit state.
"""
kind = 'fragility'
# NB: the list is populated after instantiation by .append calls
def __init__(self, array, **attrs):
self.array = array
vars(self).update(attrs)
[docs] def mean_loss_ratios_with_steps(self, steps):
"""For compatibility with vulnerability functions"""
return fine_graining(self.imls, steps)
[docs] def build(self, limit_states, discretization, steps_per_interval):
"""
:param limit_states: a sequence of limit states
:param discretization: continouos fragility discretization parameter
:param steps_per_interval: steps_per_interval parameter
:returns: a populated FragilityFunctionList instance
"""
new = copy.copy(self)
new.clear()
add_zero = (self.format == 'discrete' and
self.nodamage and self.nodamage <= self.imls[0])
new.imls = build_imls(new, discretization)
if steps_per_interval > 1:
new._interp_imls = build_imls( # passed to classical_damage
new, discretization, steps_per_interval)
for i, ls in enumerate(limit_states):
data = self.array[i]
if self.format == 'discrete':
if add_zero:
if len(self.imls) == len(data): # add no_damage
imls = [self.nodamage] + self.imls
else: # already added
imls = self.imls
new.append(FragilityFunctionDiscrete(
ls, imls, numpy.concatenate([[0.], data]),
self.nodamage))
else:
new.append(FragilityFunctionDiscrete(
ls, self.imls, data, self.nodamage))
else: # continuous
new.append(FragilityFunctionContinuous(
ls, data[0], data[1], # mean and stddev
self.minIML, self.maxIML, self.nodamage))
return new
def __repr__(self):
kvs = ['%s=%s' % item for item in vars(self).items()]
return '<FragilityFunctionList %s>' % ', '.join(kvs)
[docs]class ConsequenceModel(dict):
"""
Dictionary of consequence functions. You can access each
function given its name with the square bracket notation.
:param str id: ID of the model
:param str assetCategory: asset category (i.e. buildings, population)
:param str lossCategory: loss type (i.e. structural, contents, ...)
:param str description: description of the model
:param limitStates: a list of limit state strings
"""
kind = 'consequence'
def __init__(self, id, assetCategory, lossCategory, description,
limitStates):
self.id = id
self.assetCategory = assetCategory
self.lossCategory = lossCategory
self.description = description
self.limitStates = limitStates
def __repr__(self):
return '<%s %s %s %s>' % (
self.__class__.__name__, self.lossCategory,
', '.join(self.limitStates), ' '.join(sorted(self)))
[docs]def build_imls(ff, continuous_fragility_discretization,
steps_per_interval=0):
"""
Build intensity measure levels from a fragility function. If the function
is continuous, they are produced simply as a linear space between minIML
and maxIML. If the function is discrete, they are generated with a
complex logic depending on the noDamageLimit and the parameter
steps per interval.
:param ff: a fragility function object
:param continuous_fragility_discretization: .ini file parameter
:param steps_per_interval: .ini file parameter
:returns: generated imls
"""
if ff.format == 'discrete':
imls = ff.imls
if ff.nodamage and ff.nodamage < imls[0]:
imls = [ff.nodamage] + imls
if steps_per_interval > 1:
gen_imls = fine_graining(imls, steps_per_interval)
else:
gen_imls = imls
else: # continuous
gen_imls = numpy.linspace(ff.minIML, ff.maxIML,
continuous_fragility_discretization)
return gen_imls
# this is meant to be instantiated by riskmodels.get_fragility_model
[docs]class FragilityModel(dict):
"""
Container for a set of fragility functions. You can access each
function given the IMT and taxonomy with the square bracket notation.
:param str id: ID of the model
:param str assetCategory: asset category (i.e. buildings, population)
:param str lossCategory: loss type (i.e. structural, contents, ...)
:param str description: description of the model
:param limitStates: a list of limit state strings
"""
def __init__(self, id, assetCategory, lossCategory, description,
limitStates):
self.id = id
self.assetCategory = assetCategory
self.lossCategory = lossCategory
self.description = description
self.limitStates = limitStates
def __repr__(self):
return '<%s %s %s %s>' % (
self.__class__.__name__, self.lossCategory,
self.limitStates, sorted(self))
# ########################### random generators ###########################
def _alpha_beta(mean, stddev):
c = (1 - mean) / stddev ** 2 - 1 / mean
return c * mean ** 2, c * (mean - mean ** 2)
[docs]class MultiEventRNG(object):
"""
An object ``MultiEventRNG(master_seed, eids, asset_correlation=0)``
has a method ``.get(A, eids)`` which returns a matrix of (A, E)
normally distributed random numbers.
If the ``asset_correlation`` is 1 the numbers are the same.
>>> rng = MultiEventRNG(
... master_seed=42, eids=[0, 1, 2], asset_correlation=1)
>>> eids = numpy.array([1] * 3)
>>> means = numpy.array([.5] * 3)
>>> covs = numpy.array([.1] * 3)
>>> rng.lognormal(eids, means, covs)
array([0.38892466, 0.38892466, 0.38892466])
>>> rng.beta(eids, means, covs)
array([0.4372343 , 0.57308132, 0.56392573])
>>> fractions = numpy.array([[[.8, .1, .1]]])
>>> rng.discrete_dmg_dist([0], fractions, [10])
array([[[8, 2, 0]]], dtype=uint32)
"""
def __init__(self, master_seed, eids, asset_correlation=0):
self.master_seed = master_seed
self.asset_correlation = asset_correlation
self.rng = {}
for eid in eids:
# NB: int below is necessary for totally mysterious reasons:
# a calculation on cluster1 #41904 failed with a floating
# point seed, but I cannot reproduce the issue
ph = numpy.random.Philox(int(self.master_seed + eid))
self.rng[eid] = numpy.random.Generator(ph)
def _get_eps(self, eid, corrcache):
if self.asset_correlation:
try:
return corrcache[eid]
except KeyError:
corrcache[eid] = eps = self.rng[eid].normal()
return eps
return self.rng[eid].normal()
[docs] def lognormal(self, eids, means, covs):
"""
:param eids: event IDs
:param means: array of floats in the range 0..1
:param covs: array of floats with the same shape
:returns: array of floats
"""
corrcache = {}
eps = numpy.array([self._get_eps(eid, corrcache) for eid in eids])
sigma = numpy.sqrt(numpy.log(1 + covs ** 2))
div = numpy.sqrt(1 + covs ** 2)
return means * numpy.exp(eps * sigma) / div
# NB: asset correlation is ignored
[docs] def beta(self, eids, means, covs):
"""
:param eids: event IDs
:param means: array of floats in the range 0..1
:param covs: array of floats with the same shape
:returns: array of floats following the beta distribution
This function works properly even when some or all of the stddevs
are zero: in that case it returns the means since the distribution
becomes extremely peaked. It also works properly when some one or
all of the means are zero, returning zero in that case.
"""
# NB: you should not expect a smooth limit for the case of on cov->0
# since the random number generator will advance of a different number
# of steps with cov == 0 and cov != 0
res = numpy.array(means)
ok = (means != 0) & (covs != 0) # nonsingular values
alpha, beta = _alpha_beta(means[ok], means[ok] * covs[ok])
res[ok] = [self.rng[eid].beta(alpha[i], beta[i])
for i, eid in enumerate(eids[ok])]
return res
[docs] def discrete_dmg_dist(self, eids, fractions, numbers):
"""
Converting fractions into discrete damage distributions using bincount
and random.choice.
:param eids: E event IDs
:param fractions: array of shape (A, E, D)
:param numbers: A asset numbers
:returns: array of integers of shape (A, E, D)
"""
A, E, D = fractions.shape
assert len(eids) == E, (len(eids), E)
assert len(numbers) == A, (len(eids), A)
ddd = numpy.zeros(fractions.shape, U32)
for e, eid in enumerate(eids):
choice = self.rng[eid].choice
for a, n in enumerate(numbers):
frac = fractions[a, e] # shape D
states = choice(D, n, p=frac/frac.sum()) # n states
# ex. [0, 0, 0, 1, 0, 0, 0, 1, 0, 0], 8 times 0, 2 times 1
ddd[a, e] = numpy.bincount(states, minlength=D)
return ddd
[docs] def boolean_dist(self, probs, num_sims):
"""
Convert E probabilities into an array of (E, S)
booleans, being S the number of secondary simulations.
>>> rng = MultiEventRNG(master_seed=42, eids=[0, 1, 2])
>>> dist = rng.boolean_dist(probs=[.1, .2, 0.], num_sims=100)
>>> dist.sum(axis=1) # around 10% and 20% respectively
array([12., 17., 0.])
"""
E = len(self.rng)
assert len(probs) == E, (len(probs), E)
booldist = numpy.zeros((E, num_sims))
for e, eid, prob in zip(range(E), self.rng, probs):
if prob > 0:
booldist[e] = self.rng[eid].random(num_sims) < prob
return booldist
#
# Event Based
#
CurveParams = collections.namedtuple(
'CurveParams',
['index', 'loss_type', 'curve_resolution', 'ratios', 'user_provided'])
#
# Scenario Damage
#
[docs]def scenario_damage(fragility_functions, gmvs):
"""
:param fragility_functions: a list of D - 1 fragility functions
:param gmvs: an array of E ground motion values
:returns: an array of (D, E) damage fractions
"""
lst = [numpy.ones_like(gmvs)]
for f, ff in enumerate(fragility_functions): # D - 1 functions
lst.append(ff(gmvs))
lst.append(numpy.zeros_like(gmvs))
# convert a (D + 1, E) array into a (D, E) array
arr = pairwise_diff(numpy.array(lst))
arr[arr < 1E-7] = 0 # sanity check
return arr
#
# Classical Damage
#
[docs]def annual_frequency_of_exceedence(poe, t_haz):
"""
:param poe: array of probabilities of exceedence
:param t_haz: hazard investigation time
:returns: array of frequencies (with +inf values where poe=1)
"""
assert not (poe == 1).any() # avoid log(0)
return - numpy.log(1-poe) / t_haz
[docs]def classical_damage(
fragility_functions, hazard_imls, hazard_poes,
investigation_time, risk_investigation_time,
steps_per_interval=1):
"""
:param fragility_functions:
a list of fragility functions for each damage state
:param hazard_imls:
Intensity Measure Levels
:param hazard_poes:
hazard curve
:param investigation_time:
hazard investigation time
:param risk_investigation_time:
risk investigation time
:param steps_per_interval:
steps per interval
:returns:
an array of M probabilities of occurrence where M is the numbers
of damage states.
"""
if steps_per_interval > 1: # interpolate
imls = numpy.array(fragility_functions._interp_imls)
min_val, max_val = hazard_imls[0], hazard_imls[-1]
assert min_val > 0, hazard_imls # sanity check
imls[imls < min_val] = min_val
imls[imls > max_val] = max_val
poes = interpolate.interp1d(hazard_imls, hazard_poes)(imls)
else:
imls = hazard_imls
poes = numpy.array(hazard_poes)
afe = annual_frequency_of_exceedence(poes, investigation_time)
annual_frequency_of_occurrence = pairwise_diff(
pairwise_mean([afe[0]] + list(afe) + [afe[-1]]))
poes_per_damage_state = []
for ff in fragility_functions:
fx = annual_frequency_of_occurrence @ ff(imls)
poe_per_damage_state = 1. - numpy.exp(-fx * risk_investigation_time)
poes_per_damage_state.append(poe_per_damage_state)
poos = pairwise_diff([1] + poes_per_damage_state + [0])
return poos
#
# Classical
#
[docs]def classical(vulnerability_function, hazard_imls, hazard_poes, loss_ratios):
"""
:param vulnerability_function:
an instance of
:py:class:`openquake.risklib.scientific.VulnerabilityFunction`
representing the vulnerability function used to compute the curve.
:param hazard_imls:
the hazard intensity measure type and levels
:type hazard_poes:
the hazard curve
:param loss_ratios:
a tuple of C loss ratios
:returns:
an array of shape (2, C)
"""
assert len(hazard_imls) == len(hazard_poes), (
len(hazard_imls), len(hazard_poes))
vf = vulnerability_function
imls = vf.mean_imls()
lrem = vf.loss_ratio_exceedance_matrix(loss_ratios)
# saturate imls to hazard imls
min_val, max_val = hazard_imls[0], hazard_imls[-1]
imls[imls < min_val] = min_val
imls[imls > max_val] = max_val
# interpolate the hazard curve
poes = interpolate.interp1d(hazard_imls, hazard_poes)(imls)
# compute the poos
pos = pairwise_diff(poes)
lrem_po = numpy.empty(lrem.shape)
for idx, po in enumerate(pos):
lrem_po[:, idx] = lrem[:, idx] * po # column * po
return numpy.array([loss_ratios, lrem_po.sum(axis=1)])
# used in classical_risk only
[docs]def conditional_loss_ratio(loss_ratios, poes, probability):
"""
Return the loss ratio corresponding to the given PoE (Probability
of Exceendance). We can have four cases:
1. If `probability` is in `poes` it takes the bigger
corresponding loss_ratios.
2. If it is in `(poe1, poe2)` where both `poe1` and `poe2` are
in `poes`, then we perform a linear interpolation on the
corresponding losses
3. if the given probability is smaller than the
lowest PoE defined, it returns the max loss ratio .
4. if the given probability is greater than the highest PoE
defined it returns zero.
:param loss_ratios: non-decreasing loss ratio values (float32)
:param poes: non-increasing probabilities of exceedance values (float32)
:param float probability: the probability value used to
interpolate the loss curve
"""
assert len(loss_ratios) >= 3, loss_ratios
probability = numpy.float32(probability)
if not isinstance(loss_ratios, numpy.ndarray):
loss_ratios = numpy.float32(loss_ratios)
if not isinstance(poes, numpy.ndarray):
poes = numpy.float32(poes)
rpoes = poes[::-1]
if probability > poes[0]: # max poes
return 0.0
elif probability < poes[-1]: # min PoE
return loss_ratios[-1]
if probability in poes:
return loss_ratios[probability == poes].max()
else:
interval_index = bisect.bisect_right(rpoes, probability)
if interval_index == len(poes): # poes are all nan
return float('nan')
elif interval_index == 1: # boundary case
x1, x2 = poes[-2:]
y1, y2 = loss_ratios[-2:]
else:
x1, x2 = poes[-interval_index-1:-interval_index + 1]
y1, y2 = loss_ratios[-interval_index-1:-interval_index + 1]
return (y2 - y1) / (x2 - x1) * (probability - x1) + y1
#
# Insured Losses
#
[docs]def insured_losses(losses, deductible, insured_limit):
"""
:param losses: array of ground-up losses
:param deductible: array of deductible values
:param insured_limit: array of insurance limit values
Compute insured losses for the given asset and losses, from the point
of view of the insurance company. For instance:
>>> insured_losses(numpy.array([3, 20, 101]),
... numpy.array([5, 5, 5]), numpy.array([100, 100, 100]))
array([ 0, 15, 95])
- if the loss is 3 (< 5) the company does not pay anything
- if the loss is 20 the company pays 20 - 5 = 15
- if the loss is 101 the company pays 100 - 5 = 95
"""
assert isinstance(losses, numpy.ndarray), losses
if not isinstance(deductible, numpy.ndarray):
deductible = numpy.full_like(losses, deductible)
if not isinstance(insured_limit, numpy.ndarray):
insured_limit = numpy.full_like(losses, insured_limit)
small = losses < deductible
big = losses > insured_limit
out = losses - deductible
out[small] = 0.
out[big] = insured_limit[big] - deductible[big]
return out
[docs]def insurance_losses(asset_df, losses_by_lt, policy_df):
"""
:param asset_df: DataFrame of assets
:param losses_by_lt: loss_type -> DataFrame[eid, aid, variance, loss]
:param policy_df: a DataFrame of policies
"""
asset_policy_df = asset_df.join(
policy_df.set_index('policy'), on='policy', how='inner')
for lt in policy_df.loss_type.unique():
if '+' in lt:
total_losses(asset_df, losses_by_lt, lt)
for lt, out in list(losses_by_lt.items()):
if len(out) == 0:
continue
adf = asset_policy_df[asset_policy_df.loss_type == lt]
new = out[numpy.isin(out.aid, adf.index)]
if len(new) == 0:
continue
new['variance'] = 0.
j = new.join(adf, on='aid', how='inner')
if '+' in lt:
values = numpy.sum(
j['value-' + ltype].to_numpy() for ltype in lt.split('+'))
else:
values = j['value-' + lt].to_numpy()
losses = j.loss.to_numpy()
deds = j.deductible.to_numpy() * values
lims = j.insurance_limit.to_numpy() * values
new['loss'] = insured_losses(losses, deds, lims)
losses_by_lt[lt + '_ins'] = new
[docs]def total_losses(asset_df, losses_by_lt, kind):
"""
:param asset_df: DataFrame of assets
:param losses_by_lt: lt -> DataFrame[eid, aid]
:param kind: kind of total loss (i.e. "structural+nonstructural")
"""
if kind in TOTLOSSES:
ltypes = kind.split('+')
else:
raise ValueError(kind)
losses_by_lt[kind] = _agg([losses_by_lt[lt] for lt in ltypes])
[docs]def insurance_loss_curve(curve, deductible, insured_limit):
"""
Compute an insured loss ratio curve given a loss ratio curve
:param curve: an array 2 x R (where R is the curve resolution)
:param float deductible: the deductible limit in fraction form
:param float insured_limit: the insured limit in fraction form
>>> losses = numpy.array([3, 20, 101])
>>> poes = numpy.array([0.9, 0.5, 0.1])
>>> insurance_loss_curve(numpy.array([losses, poes]), 5, 100)
array([[ 3. , 20. ],
[ 0.85294118, 0.5 ]])
"""
losses, poes = curve[:, curve[0] <= insured_limit]
limit_poe = interpolate.interp1d(
*curve, bounds_error=False, fill_value=1)(deductible)
return numpy.array([
losses,
numpy.piecewise(poes, [poes > limit_poe], [limit_poe, lambda x: x])])
#
# Benefit Cost Ratio Analysis
#
[docs]def bcr(eal_original, eal_retrofitted, interest_rate,
asset_life_expectancy, asset_value, retrofitting_cost):
"""
Compute the Benefit-Cost Ratio.
BCR = (EALo - EALr)(1-exp(-r*t))/(r*C)
Where:
* BCR -- Benefit cost ratio
* EALo -- Expected annual loss for original asset
* EALr -- Expected annual loss for retrofitted asset
* r -- Interest rate
* t -- Life expectancy of the asset
* C -- Retrofitting cost
"""
return ((eal_original - eal_retrofitted) * asset_value *
(1 - numpy.exp(- interest_rate * asset_life_expectancy)) /
(interest_rate * retrofitting_cost))
# ####################### statistics #################################### #
[docs]def pairwise_mean(values):
"Averages between a value and the next value in a sequence"
return numpy.array([numpy.mean(pair) for pair in pairwise(values)])
[docs]def pairwise_diff(values):
"Differences between a value and the next value in a sequence"
return numpy.array([x - y for x, y in pairwise(values)])
[docs]def mean_std(fractions):
"""
Given an N x M matrix, returns mean and std computed on the rows,
i.e. two M-dimensional vectors.
"""
n = fractions.shape[0]
if n == 1: # avoid warnings when computing the stddev
return fractions[0], numpy.ones_like(fractions[0]) * numpy.nan
return numpy.mean(fractions, axis=0), numpy.std(fractions, axis=0, ddof=1)
[docs]def loss_maps(curves, conditional_loss_poes):
"""
:param curves: an array of loss curves
:param conditional_loss_poes: a list of conditional loss poes
:returns: a composite array of loss maps with the same shape
"""
loss_maps_dt = numpy.dtype([('poe-%s' % poe, F32)
for poe in conditional_loss_poes])
loss_maps = numpy.zeros(curves.shape, loss_maps_dt)
for idx, curve in numpy.ndenumerate(curves):
for poe in conditional_loss_poes:
loss_maps['poe-%s' % poe][idx] = conditional_loss_ratio(
curve['losses'], curve['poes'], poe)
return loss_maps
[docs]def broadcast(func, composite_array, *args):
"""
Broadcast an array function over a composite array
"""
dic = {}
dtypes = []
for name in composite_array.dtype.names:
dic[name] = func(composite_array[name], *args)
dtypes.append((name, dic[name].dtype))
res = numpy.zeros(dic[name].shape, numpy.dtype(dtypes))
for name in dic:
res[name] = dic[name]
return res
[docs]def average_loss(lc):
"""
Given a loss curve array with `poe` and `loss` fields,
computes the average loss on a period of time.
:note: As the loss curve is supposed to be piecewise linear as it
is a result of a linear interpolation, we compute an exact
integral by using the trapeizodal rule with the width given by the
loss bin width.
"""
losses, poes = (lc['loss'], lc['poe']) if lc.dtype.names else lc
return -pairwise_diff(losses) @ pairwise_mean(poes)
[docs]def normalize_curves_eb(curves):
"""
A more sophisticated version of normalize_curves, used in the event
based calculator.
:param curves: a list of pairs (losses, poes)
:returns: first losses, all_poes
"""
# we assume non-decreasing losses, so losses[-1] is the maximum loss
non_zero_curves = [(losses, poes)
for losses, poes in curves if losses[-1] > 0]
if not non_zero_curves: # no damage. all zero curves
return curves[0][0], numpy.array([poes for _losses, poes in curves])
else: # standard case
max_losses = [losses[-1] for losses, _poes in non_zero_curves]
reference_curve = non_zero_curves[numpy.argmax(max_losses)]
loss_ratios = reference_curve[0]
curves_poes = [interpolate.interp1d(
losses, poes, bounds_error=False, fill_value=0)(loss_ratios)
for losses, poes in curves]
# fix degenerated case with flat curve
for cp in curves_poes:
if numpy.isnan(cp[0]):
cp[0] = 0
return loss_ratios, numpy.array(curves_poes)
[docs]def build_loss_curve_dt(curve_resolution, insurance_losses=False):
"""
:param curve_resolution:
dictionary loss_type -> curve_resolution
:param insurance_losses:
configuration parameter
:returns:
loss_curve_dt
"""
lc_list = []
for lt in sorted(curve_resolution):
C = curve_resolution[lt]
pairs = [('losses', (F32, C)), ('poes', (F32, C))]
lc_dt = numpy.dtype(pairs)
lc_list.append((str(lt), lc_dt))
if insurance_losses:
for lt in sorted(curve_resolution):
C = curve_resolution[lt]
pairs = [('losses', (F32, C)), ('poes', (F32, C))]
lc_dt = numpy.dtype(pairs)
lc_list.append((str(lt) + '_ins', lc_dt))
loss_curve_dt = numpy.dtype(lc_list) if lc_list else None
return loss_curve_dt
[docs]def return_periods(eff_time, num_losses):
"""
:param eff_time: ses_per_logic_tree_path * investigation_time
:param num_losses: used to determine the minimum period
:returns: an array of periods of dtype uint32
Here are a few examples:
>>> return_periods(1, 1)
Traceback (most recent call last):
...
ValueError: eff_time too small: 1
>>> return_periods(2, 2)
array([1, 2], dtype=uint32)
>>> return_periods(2, 10)
array([1, 2], dtype=uint32)
>>> return_periods(100, 2)
array([ 50, 100], dtype=uint32)
>>> return_periods(1000, 1000)
array([ 1, 2, 5, 10, 20, 50, 100, 200, 500, 1000],
dtype=uint32)
"""
if eff_time < 2:
raise ValueError('eff_time too small: %s' % eff_time)
if num_losses < 2:
raise ValueError('num_losses too small: %s' % num_losses)
min_time = eff_time / num_losses
period = 1
periods = []
loop = True
while loop:
for val in [1, 2, 5]:
time = period * val
if time >= min_time:
if time > eff_time:
loop = False
break
periods.append(time)
period *= 10
return U32(periods)
[docs]def losses_by_period(losses, return_periods, num_events=None, eff_time=None):
"""
:param losses: simulated losses
:param return_periods: return periods of interest
:param num_events: the number of events (>= number of losses)
:param eff_time: investigation_time * ses_per_logic_tree_path
:returns: interpolated losses for the return periods, possibly with NaN
NB: the return periods must be ordered integers >= 1. The interpolated
losses are defined inside the interval min_time < time < eff_time
where min_time = eff_time /num_events. On the right of the interval they
have NaN values; on the left zero values.
If num_events is not passed, it is inferred from the number of losses;
if eff_time is not passed, it is inferred from the longest return period.
Here is an example:
>>> losses = [3, 2, 3.5, 4, 3, 23, 11, 2, 1, 4, 5, 7, 8, 9, 13]
>>> losses_by_period(losses, [1, 2, 5, 10, 20, 50, 100], 20)
array([ 0. , 0. , 0. , 3.5, 8. , 13. , 23. ])
"""
P = len(return_periods)
assert len(losses)
if isinstance(losses, list):
losses = numpy.array(losses)
num_losses = len(losses)
if num_events is None:
num_events = num_losses
elif num_events < num_losses:
raise ValueError(
'There are not enough events (%d<%d) to compute the loss curve'
% (num_events, num_losses))
if eff_time is None:
eff_time = return_periods[-1]
losses = numpy.sort(losses)
# num_losses < num_events: just add zeros
num_zeros = num_events - num_losses
if num_zeros:
newlosses = numpy.zeros(num_events, losses.dtype)
newlosses[num_events - num_losses:num_events] = losses
losses = newlosses
periods = eff_time / numpy.arange(num_events, 0., -1)
num_left = sum(1 for rp in return_periods if rp < periods[0])
num_right = sum(1 for rp in return_periods if rp > periods[-1])
rperiods = [rp for rp in return_periods if periods[0] <= rp <= periods[-1]]
curve = numpy.zeros(len(return_periods), losses.dtype)
logr, logp = numpy.log(rperiods), numpy.log(periods)
curve[num_left:P - num_right] = numpy.interp(logr, logp, losses)
curve[P - num_right:] = numpy.nan
return curve
[docs]class LossCurvesMapsBuilder(object):
"""
Build losses curves and maps for all loss types at the same time.
:param conditional_loss_poes: a list of PoEs, possibly empty
:param return_periods: ordered array of return periods
:param loss_dt: composite dtype for the loss types
:param weights: weights of the realizations
:param num_events: number of events for each realization
:param eff_time: ses_per_logic_tree_path * hazard investigation time
"""
def __init__(self, conditional_loss_poes, return_periods, loss_dt,
weights, num_events, eff_time, risk_investigation_time):
self.conditional_loss_poes = conditional_loss_poes
self.return_periods = return_periods
self.loss_dt = loss_dt
self.weights = weights
self.num_events = num_events
self.eff_time = eff_time
if return_periods.sum() == 0:
self.poes = 1
else:
self.poes = 1. - numpy.exp(
- risk_investigation_time / return_periods)
# used in post_risk
[docs] def build_curve(self, losses, rlzi=0):
return losses_by_period(
losses, self.return_periods, self.num_events[rlzi], self.eff_time)
def _agg(loss_dfs, weights=None):
# average loss DataFrames with fields (eid, aid, variance, loss)
if weights is not None:
for loss_df, w in zip(loss_dfs, weights):
loss_df['variance'] *= w
loss_df['loss'] *= w
return pandas.concat(loss_dfs).groupby(['eid', 'aid']).sum().reset_index()
[docs]class RiskComputer(dict):
"""
A callable dictionary of risk models able to compute average losses
according to the taxonomy mapping. It also computes secondary losses
*after* the average (this is a hugely simplifying approximation).
:param crm: a CompositeRiskModel
:param asset_df: a DataFrame of assets with the same taxonomy
"""
def __init__(self, crm, asset_df):
[taxidx] = asset_df.taxonomy.unique()
self.asset_df = asset_df
self.imtls = crm.imtls
self.alias = {
imt: 'gmv_%d' % i for i, imt in enumerate(crm.primary_imtls)}
self.calculation_mode = crm.oqparam.calculation_mode
self.loss_types = crm.loss_types
self.minimum_asset_loss = crm.oqparam.minimum_asset_loss # lt->float
self.wdic = {}
for lt in self.minimum_asset_loss:
for riskid, weight in crm.tmap[lt][taxidx]:
self[riskid, lt] = crm._riskmodels[riskid]
self.wdic[riskid, lt] = weight
[docs] def output(self, haz, sec_losses=(), rndgen=None):
"""
Compute averages by using the taxonomy mapping
:param haz: a DataFrame of GMFs or a ProbabilityCurve
:param sec_losses: a list of functions updating the loss dict
:param rndgen: None or MultiEventRNG instance
:returns: loss dict {extended_loss_type: loss_output}
"""
dic = collections.defaultdict(list) # lt -> outs
weights = collections.defaultdict(list) # lt -> weights
event = hasattr(haz, 'eid') # else classical (haz.array)
for key, lt in self:
rm = self[key, lt]
if len(rm.imt_by_lt) == 1:
# NB: if `check_risk_ids` raise an error then
# this code branch will never run
[(lt, imt)] = rm.imt_by_lt.items()
else:
imt = rm.imt_by_lt[lt]
col = self.alias.get(imt, imt)
if event:
out = rm(lt, self.asset_df, haz, col, rndgen)
else: # classical
out = rm(lt, self.asset_df, haz.array[self.imtls(imt), 0])
weights[lt].append(self.wdic[key, lt])
dic[lt].append(out)
out = {}
for lt in self.minimum_asset_loss:
outs = dic[lt]
if len(outs) == 0: # can happen for nonstructural_ins
continue
elif len(outs) > 1 and hasattr(outs[0], 'loss'):
# computing the average dataframe for event_based_risk/case_8
out[lt] = _agg(outs, weights[lt])
elif len(outs) > 1:
# for oq-risk-tests/test/event_based_damage/inputs/cali/job.ini
out[lt] = numpy.average(outs, weights=weights[lt], axis=0)
else:
out[lt] = outs[0]
if event:
for update_losses in sec_losses:
update_losses(self.asset_df, out)
return out
[docs] def todict(self):
"""
:returns: a literal dict describing the RiskComputer
"""
rfdic = {}
for rm in self.values():
for lt, rf in rm.risk_functions.items():
dic = ast.literal_eval(hdf5.obj_to_json(rf))
if getattr(rf, 'retro', False):
retro = ast.literal_eval(hdf5.obj_to_json(rf.retro))
dic['openquake.risklib.scientific.VulnerabilityFunction'][
'retro'] = retro
rfdic['%s#%s' % (rf.id, lt)] = dic
df = self.asset_df
dic = dict(asset_df={col: df[col].tolist() for col in df.columns},
risk_functions=rfdic,
wdic={'%s#%s' % k: v for k, v in self.wdic.items()},
alias=self.alias,
loss_types=self.loss_types,
minimum_asset_loss=self.minimum_asset_loss,
calculation_mode=self.calculation_mode)
return dic
# ####################### Consequences ##################################### #
[docs]def consequence(consequence, coeffs, asset, dmgdist, loss_type):
"""
:param consequence: kind of consequence
:param coeffs: coefficients per damage state
:param asset: asset record
:param dmgdist: an array of probabilies of shape (E, D - 1)
:param loss_type: loss type string
:returns: array of shape E
"""
if consequence not in KNOWN_CONSEQUENCES:
raise NotImplementedError(consequence)
elif consequence == 'losses':
return dmgdist @ coeffs * asset['value-' + loss_type]
elif consequence == 'collapsed':
return dmgdist @ coeffs * asset['value-number']
elif consequence == 'injured':
return dmgdist @ coeffs * asset['occupants_night']
elif consequence == 'fatalities':
return dmgdist @ coeffs * asset['occupants_night']
elif consequence == 'homeless':
return dmgdist @ coeffs * asset['occupants_night']
[docs]def get_agg_value(consequence, agg_values, agg_id, xltype):
"""
:returns:
sum of the values corresponding to agg_id for the given consequence
"""
aval = agg_values[agg_id]
if consequence == 'collapsed':
return aval['number']
elif consequence == 'injured':
return aval['occupants_night']
elif consequence == 'fatalities':
return aval['occupants_night']
elif consequence == 'homeless':
return aval['occupants_night']
elif consequence in ('loss', 'losses'):
if xltype.endswith('_ins'):
xltype = xltype[:-4]
if '+' in xltype: # total loss type
return sum(aval[lt] for lt in xltype.split('+'))
return aval[xltype]
else:
raise NotImplementedError(consequence)
# ########################### u64_to_eal ################################# #
[docs]def u64_to_eal(u64):
"""
Convert an unit64 into a triple (eid, aid, lid)
>>> u64_to_eal(42949673216001)
(10000, 1000, 1)
"""
eid, x = divmod(u64, TWO32)
aid, lid = divmod(x, 256)
return eid, aid, lid
[docs]def eal_to_u64(eid, aid, lid):
"""
Convert a triple (eid, aid, lid) into an uint64:
>>> eal_to_u64(10000, 1000, 1)
42949673216001
"""
return U64(eid * TWO32) + U64(aid * 256) + U64(lid)
if __name__ == '__main__':
# plots of the beta distribution in terms of mean and stddev
# see https://en.wikipedia.org/wiki/Beta_distribution
import matplotlib.pyplot as plt
x = numpy.arange(0, 1, .01)
def beta(mean, stddev):
a, b = _alpha_beta(numpy.array([mean]*100),
numpy.array([stddev]*100))
return stats.beta.pdf(x, a, b)
rng = MultiEventRNG(42, [1])
ones = numpy.ones(100)
vals = rng.beta(1, .5 * ones, .05 * ones)
print(vals.mean(), vals.std())
# print(vals)
vals = rng.beta(1, .5 * ones, .01 * ones)
print(vals.mean(), vals.std())
# print(vals)
plt.plot(x, beta(.5, .05), label='.5[.05]')
plt.plot(x, beta(.5, .01), label='.5[.01]')
plt.legend()
plt.show()