# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# LICENSE
#
# Copyright (C) 2010-2021 GEM Foundation, G. Weatherill, M. Pagani,
# D. Monelli.
#
# The Hazard Modeller's Toolkit is free software: you can redistribute
# it and/or modify it under the terms of the GNU Affero General Public
# License as published by the Free Software Foundation, either version
# 3 of the License, or (at your option) any later version.
#
# You should have received a copy of the GNU Affero General Public License
# along with OpenQuake. If not, see <http://www.gnu.org/licenses/>
#
# DISCLAIMER
#
# The software Hazard Modeller's Toolkit (openquake.hmtk) provided herein
# is released as a prototype implementation on behalf of
# scientists and engineers working within the GEM Foundation (Global
# Earthquake Model).
#
# It is distributed for the purpose of open collaboration and in the
# hope that it will be useful to the scientific, engineering, disaster
# risk and software design communities.
#
# The software is NOT distributed as part of GEM’s OpenQuake suite
# (https://www.globalquakemodel.org/tools-products) and must be considered as a
# separate entity. The software provided herein is designed and implemented
# by scientific staff. It is not developed to the design standards, nor
# subject to same level of critical review by professional software
# developers, as GEM’s OpenQuake software suite.
#
# Feedback and contribution to the software is welcome, and can be
# directed to the hazard scientific staff of the GEM Model Facility
# (hazard@globalquakemodel.org).
#
# The Hazard Modeller's Toolkit (openquake.hmtk) is therefore distributed
# WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
# for more details.
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# The GEM Foundation, and the authors of the software, assume no
# liability for use of the software.
"""
"""
import numpy as np
[docs]def recurrence_table(mag, dmag, year, time_interval=None):
"""
Table of recurrence statistics for each magnitude
[Magnitude, Number of Observations, Cumulative Number
of Observations >= M, Number of Observations
(normalised to annual value), Cumulative Number of
Observations (normalised to annual value)]
Counts number and cumulative number of occurrences of
each magnitude in catalogue
:param numpy.ndarray mag:
Catalog matrix magnitude column
:param numpy.ndarray dmag:
Magnitude interval
:param numpy.ndarray year:
Catalog matrix year column
:returns numpy.ndarray recurrence table:
Recurrence table
"""
# Define magnitude vectors
if time_interval is None:
num_year = np.max(year) - np.min(year) + 1.
else:
num_year = time_interval
upper_m = np.max(np.ceil(10.0 * mag) / 10.0)
lower_m = np.min(np.floor(10.0 * mag) / 10.0)
mag_range = np.arange(lower_m, upper_m + (1.5 * dmag), dmag)
mval = mag_range[:-1] + (dmag / 2.0)
# Find number of earthquakes inside range
number_obs = np.histogram(mag, mag_range)[0]
number_rows = np.shape(number_obs)[0]
# Cumulative number of events
n_c = np.zeros((number_rows, 1))
i = 0
while i < number_rows:
n_c[i] = np.sum(number_obs[i:], axis=0)
i += 1
# Normalise to Annual Rate
number_obs_annual = number_obs / num_year
n_c_annual = n_c / num_year
rec_table = np.column_stack([mval, number_obs, n_c, number_obs_annual,
n_c_annual])
return rec_table
[docs]def generate_trunc_gr_magnitudes(bval, mmin, mmax, nsamples):
'''
Generate a random list of magnitudes distributed according to a
truncated Gutenberg-Richter model
:param float bval:
b-value
:param float mmin:
Minimum Magnitude
:param float mmax:
Maximum Magnitude
:param int nsamples:
Number of samples
:returns:
Vector of generated magnitudes
'''
sampler = np.random.uniform(0., 1., nsamples)
beta = bval * np.log(10.)
return (-1. / beta) * (
np.log(1. - sampler * (1 - np.exp(-beta * (mmax - mmin))))) + mmin
[docs]def generate_synthetic_magnitudes(aval, bval, mmin, mmax, nyears):
'''
Generates a synthetic catalogue for a specified number of years, with
magnitudes distributed according to a truncated Gutenberg-Richter
distribution
:param float aval:
a-value
:param float bval:
b-value
:param float mmin:
Minimum Magnitude
:param float mmax:
Maximum Magnitude
:param int nyears:
Number of years
:returns:
Synthetic catalogue (dict) with year and magnitude attributes
'''
nsamples = int(np.round(nyears * (10. ** (aval - bval * mmin)), 0))
year = np.random.randint(0, nyears, nsamples)
# Get magnitudes
mags = generate_trunc_gr_magnitudes(bval, mmin, mmax, nsamples)
return {'magnitude': mags, 'year': np.sort(year)}
[docs]def downsample_completeness_table(comp_table, sample_width=0.1, mmax=None):
"""
Re-sample the completeness table to a specified sample_width
"""
new_comp_table = []
for i in range(comp_table.shape[0] - 1):
mvals = np.arange(comp_table[i, 1],
comp_table[i + 1, 1], d_m) # FIXME: d_m is undefined!
new_comp_table.extend([[comp_table[i, 0], mval] for mval in mvals])
# If mmax > last magnitude in completeness table
if mmax and (mmax > comp_table[-1, 1]):
new_comp_table.extend(
[[comp_table[-1, 0], mval]
for mval in np.arange(comp_table[-1, 1], mmax + d_m, d_m)])
return np.array(new_comp_table)
[docs]def get_completeness_counts(catalogue, completeness, d_m):
"""
Returns the number of earthquakes in a set of magnitude bins of specified
with, along with the corresponding completeness duration (in years) of the
bin
:param catalogue:
Earthquake catalogue as instance of
:class: openquake.hmtk.seisimicity.catalogue.Catalogue
:param numpy.ndarray completeness:
Completeness table [year, magnitude]
:param float d_m:
Bin size
:returns:
* cent_mag - array indicating center of magnitude bins
* t_per - array indicating total duration (in years) of completeness
* n_obs - number of events in completeness period
"""
mmax_obs = np.max(catalogue.data["magnitude"])
# thw line below was added by Nick Ackerley but it breaks the tests
# catalogue.data["dtime"] = catalogue.get_decimal_time()
if mmax_obs > np.max(completeness[:, 1]):
cmag = np.hstack([completeness[:, 1], mmax_obs])
else:
cmag = completeness[:, 1]
cyear = np.hstack([catalogue.end_year + 1, completeness[:, 0]])
# When the magnitude value is on the bin edge numpy's histogram function
# may assign randomly to one side or the other based on the floating
# point value. As catalogues are rounded to the nearest 0.1 this occurs
# frequently! So we offset the bin edge by a very tiny amount to ensure
# that, for example, M = 4.099999999 is assigned to the bin M = 4.1 and
# not 4.0
master_bins = np.arange(np.min(cmag) - 1.0E-7,
np.max(cmag) + d_m,
d_m)
count_rates = np.zeros(len(master_bins) - 1)
count_years = np.zeros_like(count_rates)
for i in range(len(cyear) - 1):
time_idx = np.logical_and(catalogue.data["dtime"] < cyear[i],
catalogue.data["dtime"] >= cyear[i + 1])
nyrs = cyear[i] - cyear[i + 1]
sel_mags = catalogue.data["magnitude"][time_idx]
m_idx = np.where(master_bins >= (cmag[i] - (d_m / 2.)))[0]
m_bins = master_bins[m_idx]
count_rates[m_idx[:-1]] += np.histogram(
sel_mags,
bins=m_bins)[0].astype(float)
count_years[m_idx[:-1]] += float(nyrs)
# Removes any zero rates greater than
last_loc = np.where(count_rates > 0)[0][-1]
n_obs = count_rates[:(last_loc + 1)]
t_per = count_years[:(last_loc + 1)]
cent_mag = (master_bins[:-1] + master_bins[1:]) / 2.
cent_mag = np.around(cent_mag[:(last_loc + 1)], 3)
return cent_mag, t_per, n_obs