# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (C) 2010-2020 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# OpenQuake is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Affero General Public License for more details.
#
# You should have received a copy of the GNU Affero General Public License
# along with OpenQuake. If not, see <http://www.gnu.org/licenses/>.
"""Engine: A collection of fundamental functions for initializing and running
calculations."""
import os
import re
import sys
import json
import time
import signal
import getpass
import logging
import traceback
import platform
import psutil
import numpy
try:
from setproctitle import setproctitle
except ImportError:
def setproctitle(title):
"Do nothing"
from urllib.request import urlopen, Request
from openquake.baselib.python3compat import decode
from openquake.baselib import (
parallel, general, config, __version__, zeromq as z)
from openquake.commonlib.oqvalidation import OqParam
from openquake.commonlib import readinput
from openquake.calculators import base, export
from openquake.commonlib import logs
OQ_API = 'https://api.openquake.org'
OQ_DISTRIBUTE = parallel.oq_distribute()
MB = 1024 ** 2
_PID = os.getpid() # the PID
_PPID = os.getppid() # the controlling terminal PID
GET_JOBS = '''--- executing or submitted
SELECT * FROM job WHERE status IN ('executing', 'submitted')
AND is_running=1 AND pid > 0 ORDER BY id'''
[docs]def get_zmq_ports():
"""
:returns: an array with the receiver ports
"""
start, stop = config.dbserver.receiver_ports.split('-')
return numpy.arange(int(start), int(stop))
if OQ_DISTRIBUTE == 'zmq':
def set_concurrent_tasks_default(calc):
"""
Set the default for concurrent_tasks based on the available
worker pools .
"""
num_workers = 0
w = config.zworkers
if w.host_cores:
host_cores = [hc.split() for hc in w.host_cores.split(',')]
else:
host_cores = []
for host, _cores in host_cores:
url = 'tcp://%s:%s' % (host, w.ctrl_port)
with z.Socket(url, z.zmq.REQ, 'connect') as sock:
if not general.socket_ready(url):
logging.warning('%s is not running', host)
continue
num_workers += sock.send('get_num_workers')
if num_workers == 0:
num_workers = os.cpu_count()
logging.warning('Missing host_cores, no idea about how many cores '
'are available, using %d', num_workers)
parallel.CT = num_workers * 2
OqParam.concurrent_tasks.default = num_workers * 2
logging.warning('Using %d zmq workers', num_workers)
elif OQ_DISTRIBUTE.startswith('celery'):
import celery.task.control # noqa: E402
def set_concurrent_tasks_default(calc):
"""
Set the default for concurrent_tasks based on the number of available
celery workers.
"""
stats = celery.task.control.inspect(timeout=1).stats()
if not stats:
logging.critical("No live compute nodes, aborting calculation")
logs.dbcmd('finish', calc.datastore.calc_id, 'failed')
sys.exit(1)
ncores = sum(stats[k]['pool']['max-concurrency'] for k in stats)
parallel.CT = ncores * 2
OqParam.concurrent_tasks.default = ncores * 2
logging.warning('Using %s, %d cores', ', '.join(sorted(stats)), ncores)
def celery_cleanup(terminate):
"""
Release the resources used by an openquake job.
In particular revoke the running tasks (if any).
:param bool terminate: the celery revoke command terminate flag
:param tasks: celery tasks
"""
# Using the celery API, terminate and revoke and terminate any running
# tasks associated with the current job.
tasks = parallel.Starmap.running_tasks
if tasks:
logging.warning('Revoking %d tasks', len(tasks))
else: # this is normal when OQ_DISTRIBUTE=no
logging.debug('No task to revoke')
while tasks:
task = tasks.pop()
tid = task.task_id
celery.task.control.revoke(tid, terminate=terminate)
logging.debug('Revoked task %s', tid)
else:
[docs] def set_concurrent_tasks_default(calc):
pass
[docs]def expose_outputs(dstore, owner=getpass.getuser(), status='complete'):
"""
Build a correspondence between the outputs in the datastore and the
ones in the database.
:param dstore: datastore
"""
oq = dstore['oqparam']
exportable = set(ekey[0] for ekey in export.export)
calcmode = oq.calculation_mode
dskeys = set(dstore) & exportable # exportable datastore keys
dskeys.add('fullreport')
rlzs = dstore['full_lt'].rlzs
if len(rlzs) > 1:
dskeys.add('realizations')
hdf5 = dstore.hdf5
if 'hcurves-stats' in hdf5 or 'hcurves-rlzs' in hdf5:
if oq.hazard_stats() or oq.individual_curves or len(rlzs) == 1:
dskeys.add('hcurves')
if oq.uniform_hazard_spectra:
dskeys.add('uhs') # export them
if oq.hazard_maps:
dskeys.add('hmaps') # export them
if 'avg_losses-stats' in dstore or (
'avg_losses-rlzs' in dstore and len(rlzs)):
dskeys.add('avg_losses-stats')
if 'curves-rlzs' in dstore and len(rlzs) == 1:
dskeys.add('loss_curves-rlzs')
if 'curves-stats' in dstore and len(rlzs) > 1:
dskeys.add('loss_curves-stats')
if oq.conditional_loss_poes: # expose loss_maps outputs
if 'loss_curves-stats' in dstore:
dskeys.add('loss_maps-stats')
if 'all_loss_ratios' in dskeys:
dskeys.remove('all_loss_ratios') # export only specific IDs
if 'ruptures' in dskeys and 'scenario' in calcmode:
exportable.remove('ruptures') # do not export, as requested by Vitor
if 'rup_loss_table' in dskeys: # keep it hidden for the moment
dskeys.remove('rup_loss_table')
if 'hmaps' in dskeys and not oq.hazard_maps:
dskeys.remove('hmaps') # do not export the hazard maps
if logs.dbcmd('get_job', dstore.calc_id) is None:
# the calculation has not been imported in the db yet
logs.dbcmd('import_job', dstore.calc_id, oq.calculation_mode,
oq.description + ' [parent]', owner, status,
oq.hazard_calculation_id, dstore.datadir)
keysize = []
for key in sorted(dskeys & exportable):
try:
size_mb = dstore.get_attr(key, 'nbytes') / MB
except (KeyError, AttributeError):
size_mb = None
keysize.append((key, size_mb))
ds_size = os.path.getsize(dstore.filename) / MB
logs.dbcmd('create_outputs', dstore.calc_id, keysize, ds_size)
[docs]class MasterKilled(KeyboardInterrupt):
"Exception raised when a job is killed manually"
[docs]def inhibitSigInt(signum, _stack):
logging.warning('Killing job, please wait')
[docs]def manage_signals(signum, _stack):
"""
Convert a SIGTERM into a SystemExit exception and a SIGINT/SIGHUP into
a MasterKilled exception with an appropriate error message.
:param int signum: the number of the received signal
:param _stack: the current frame object, ignored
"""
# Disable further CTRL-C to allow tasks revocation when Celery is used
if OQ_DISTRIBUTE.startswith('celery'):
signal.signal(signal.SIGINT, inhibitSigInt)
if signum == signal.SIGINT:
raise MasterKilled('The openquake master process was killed manually')
if signum == signal.SIGTERM:
raise SystemExit('Terminated')
if hasattr(signal, 'SIGHUP'): # there is no SIGHUP on Windows
# kill the calculation only if os.getppid() != _PPID, i.e. the
# controlling terminal died; in the workers, do nothing
if signum == signal.SIGHUP and os.getppid() != _PPID:
raise MasterKilled(
'The openquake master lost its controlling terminal')
[docs]def register_signals():
# register the manage_signals callback for SIGTERM, SIGINT, SIGHUP
# when using the Django development server this module is imported by a
# thread, so one gets a `ValueError: signal only works in main thread` that
# can be safely ignored
try:
signal.signal(signal.SIGTERM, manage_signals)
signal.signal(signal.SIGINT, manage_signals)
if hasattr(signal, 'SIGHUP'):
# Do not register our SIGHUP handler if running with 'nohup'
if signal.getsignal(signal.SIGHUP) != signal.SIG_IGN:
signal.signal(signal.SIGHUP, manage_signals)
except ValueError:
pass
[docs]def job_from_file(job_ini, job_id, username, **kw):
"""
Create a full job profile from a job config file.
:param job_ini:
Path to a job.ini file
:param job_id:
ID of the created job
:param username:
The user who will own this job profile and all results
:param kw:
Extra parameters including `calculation_mode` and `exposure_file`
:returns:
an oqparam instance
"""
hc_id = kw.pop('hazard_calculation_id', None)
try:
oq = readinput.get_oqparam(job_ini, hc_id=hc_id, **kw)
except Exception:
logs.dbcmd('finish', job_id, 'deleted')
raise
if 'calculation_mode' in kw:
oq.calculation_mode = kw.pop('calculation_mode')
if 'description' in kw:
oq.description = kw.pop('description')
if 'exposure_file' in kw: # hack used in commands.engine
fnames = kw.pop('exposure_file').split()
if fnames:
oq.inputs['exposure'] = fnames
elif 'exposure' in oq.inputs:
del oq.inputs['exposure']
logs.dbcmd('update_job', job_id,
dict(calculation_mode=oq.calculation_mode,
description=oq.description,
user_name=username,
hazard_calculation_id=hc_id))
return oq
[docs]def poll_queue(job_id, poll_time):
"""
Check the queue of executing/submitted jobs and exit when there is
a free slot.
"""
offset = config.distribution.serialize_jobs - 1
if offset >= 0:
first_time = True
while True:
jobs = logs.dbcmd(GET_JOBS)
failed = [job.id for job in jobs if not psutil.pid_exists(job.pid)]
if failed:
for job in failed:
logs.dbcmd('update_job', job,
{'status': 'failed', 'is_running': 0})
elif any(j.id < job_id - offset for j in jobs):
if first_time:
logging.warning(
'Waiting for jobs %s', [j.id for j in jobs
if j.id < job_id - offset])
logs.dbcmd('update_job', job_id,
{'status': 'submitted', 'pid': _PID})
first_time = False
time.sleep(poll_time)
else:
break
[docs]def run_calc(job_id, oqparam, exports, log_level='info', log_file=None, **kw):
"""
Run a calculation.
:param job_id:
ID of the current job
:param oqparam:
:class:`openquake.commonlib.oqvalidation.OqParam` instance
:param exports:
A comma-separated string of export types.
"""
register_signals()
setproctitle('oq-job-%d' % job_id)
logs.init(job_id, getattr(logging, log_level.upper()))
with logs.handle(job_id, log_level, log_file):
calc = base.calculators(oqparam, calc_id=job_id)
logging.info('%s running %s [--hc=%s]',
getpass.getuser(),
calc.oqparam.inputs['job_ini'],
calc.oqparam.hazard_calculation_id)
logging.info('Using engine version %s', __version__)
msg = check_obsolete_version(oqparam.calculation_mode)
if msg:
logging.warning(msg)
calc.from_engine = True
tb = 'None\n'
try:
if OQ_DISTRIBUTE.endswith('pool'):
logging.warning('Using %d cores on %s',
parallel.CT // 2, platform.node())
set_concurrent_tasks_default(calc)
t0 = time.time()
calc.run(exports=exports, **kw)
logging.info('Exposing the outputs to the database')
expose_outputs(calc.datastore)
path = calc.datastore.filename
size = general.humansize(os.path.getsize(path))
logging.info('Stored %s on %s in %d seconds',
size, path, time.time() - t0)
logs.dbcmd('finish', job_id, 'complete')
calc.datastore.close()
for line in logs.dbcmd('list_outputs', job_id, False):
general.safeprint(line)
except BaseException as exc:
if isinstance(exc, MasterKilled):
msg = 'aborted'
else:
msg = 'failed'
tb = traceback.format_exc()
try:
logging.critical(tb)
logs.dbcmd('finish', job_id, msg)
except BaseException: # an OperationalError may always happen
sys.stderr.write(tb)
raise
finally:
parallel.Starmap.shutdown()
return calc
[docs]def version_triple(tag):
"""
returns: a triple of integers from a version tag
"""
groups = re.match(r'v?(\d+)\.(\d+)\.(\d+)', tag).groups()
return tuple(int(n) for n in groups)
[docs]def check_obsolete_version(calculation_mode='WebUI'):
"""
Check if there is a newer version of the engine.
:param calculation_mode:
- the calculation mode when called from the engine
- an empty string when called from the WebUI
:returns:
- a message if the running version of the engine is obsolete
- the empty string if the engine is updated
- None if the check could not be performed (i.e. github is down)
"""
if os.environ.get('JENKINS_URL') or os.environ.get('TRAVIS'):
# avoid flooding our API server with requests from CI systems
return
headers = {'User-Agent': 'OpenQuake Engine %s;%s;%s;%s' %
(__version__, calculation_mode, platform.platform(),
config.distribution.oq_distribute)}
try:
req = Request(OQ_API + '/engine/latest', headers=headers)
# NB: a timeout < 1 does not work
data = urlopen(req, timeout=1).read() # bytes
tag_name = json.loads(decode(data))['tag_name']
current = version_triple(__version__)
latest = version_triple(tag_name)
except KeyError: # 'tag_name' not found
# NOTE: for unauthenticated requests, the rate limit allows for up
# to 60 requests per hour. Therefore, sometimes the api returns the
# following message:
# b'{"message":"API rate limit exceeded for aaa.aaa.aaa.aaa. (But'
# ' here\'s the good news: Authenticated requests get a higher rate'
# ' limit. Check out the documentation for more details.)",'
# ' "documentation_url":'
# ' "https://developer.github.com/v3/#rate-limiting"}'
msg = ('An error occurred while calling %s/engine/latest to check'
' if the installed version of the engine is up to date.\n'
'%s' % (OQ_API, data.decode('utf8')))
logging.warning(msg)
return
except Exception: # page not available or wrong version tag
msg = ('An error occurred while calling %s/engine/latest to check'
' if the installed version of the engine is up to date.' %
OQ_API)
logging.warning(msg, exc_info=True)
return
if current < latest:
return ('Version %s of the engine is available, but you are '
'still using version %s' % (tag_name, __version__))
else:
return ''