Source code for openquake.hazardlib.calc.disagg

# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (C) 2012-2016 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
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"""
:mod:`openquake.hazardlib.calc.disagg` contains
:func:`disaggregation` as well as several aggregation functions for
extracting a specific PMF from the result of :func:`disaggregation`.
"""
from __future__ import division
from openquake.baselib.python3compat import range
import sys
import numpy
import warnings
import collections
from openquake.baselib.python3compat import raise_

from openquake.hazardlib.calc import filters
from openquake.hazardlib.geo.geodetic import npoints_between
from openquake.hazardlib.geo.utils import get_longitudinal_extent
from openquake.hazardlib.geo.utils import get_spherical_bounding_box, cross_idl
from openquake.hazardlib.site import SiteCollection
from openquake.hazardlib.gsim.base import ContextMaker


[docs]def disaggregation( sources, site, imt, iml, gsims, truncation_level, n_epsilons, mag_bin_width, dist_bin_width, coord_bin_width, source_site_filter=filters.source_site_noop_filter, rupture_site_filter=filters.rupture_site_noop_filter): """ Compute "Disaggregation" matrix representing conditional probability of an intensity mesaure type ``imt`` exceeding, at least once, an intensity measure level ``iml`` at a geographical location ``site``, given rupture scenarios classified in terms of: - rupture magnitude - Joyner-Boore distance from rupture surface to site - longitude and latitude of the surface projection of a rupture's point closest to ``site`` - epsilon: number of standard deviations by which an intensity measure level deviates from the median value predicted by a GSIM, given the rupture parameters - rupture tectonic region type In other words, the disaggregation matrix allows to compute the probability of each scenario with the specified properties (e.g., magnitude, or the magnitude and distance) to cause one or more exceedences of a given hazard level. For more detailed information about the disaggregation, see for instance "Disaggregation of Seismic Hazard", Paolo Bazzurro, C. Allin Cornell, Bulletin of the Seismological Society of America, Vol. 89, pp. 501-520, April 1999. :param sources: Seismic source model, as for :mod:`PSHA <openquake.hazardlib.calc.hazard_curve>` calculator it should be an iterator of seismic sources. :param site: :class:`~openquake.hazardlib.site.Site` of interest to calculate disaggregation matrix for. :param imt: Instance of :mod:`intensity measure type <openquake.hazardlib.imt>` class. :param iml: Intensity measure level. A float value in units of ``imt``. :param gsims: Tectonic region type to GSIM objects mapping. :param truncation_level: Float, number of standard deviations for truncation of the intensity distribution. :param n_epsilons: Integer number of epsilon histogram bins in the result matrix. :param mag_bin_width: Magnitude discretization step, width of one magnitude histogram bin. :param dist_bin_width: Distance histogram discretization step, in km. :param coord_bin_width: Longitude and latitude histograms discretization step, in decimal degrees. :param source_site_filter: Optional source-site filter function. See :mod:`openquake.hazardlib.calc.filters`. :param rupture_site_filter: Optional rupture-site filter function. See :mod:`openquake.hazardlib.calc.filters`. :returns: A tuple of two items. First is itself a tuple of bin edges information for (in specified order) magnitude, distance, longitude, latitude, epsilon and tectonic region types. Second item is 6d-array representing the full disaggregation matrix. Dimensions are in the same order as bin edges in the first item of the result tuple. The matrix can be used directly by pmf-extractor functions. """ bins_data = _collect_bins_data(sources, site, imt, iml, gsims, truncation_level, n_epsilons, source_site_filter, rupture_site_filter) if all(len(x) == 0 for x in bins_data): # No ruptures have contributed to the hazard level at this site. warnings.warn( 'No ruptures have contributed to the hazard at site %s' % site, RuntimeWarning ) return None, None bin_edges = _define_bins(bins_data, mag_bin_width, dist_bin_width, coord_bin_width, truncation_level, n_epsilons) diss_matrix = _arrange_data_in_bins(bins_data, bin_edges) return bin_edges, diss_matrix
def _collect_bins_data(sources, site, imt, iml, gsims, truncation_level, n_epsilons, source_site_filter, rupture_site_filter): """ Extract values of magnitude, distance, closest point, tectonic region types and PoE distribution. This method processes the source model (generates ruptures) and collects all needed parameters to arrays. It also defines tectonic region type bins sequence. """ mags = [] dists = [] lons = [] lats = [] tect_reg_types = [] probs_no_exceed = [] sitecol = SiteCollection([site]) sitemesh = sitecol.mesh _next_trt_num = 0 trt_nums = {} # here we ignore filtered site collection because either it is the same # as the original one (with one site), or the source/rupture is filtered # out and doesn't show up in the filter's output for src_idx, (source, s_sites) in \ enumerate(source_site_filter(sources, sitecol)): try: tect_reg = source.tectonic_region_type gsim = gsims[tect_reg] cmaker = ContextMaker([gsim]) if tect_reg not in trt_nums: trt_nums[tect_reg] = _next_trt_num _next_trt_num += 1 tect_reg = trt_nums[tect_reg] for rupture, r_sites in rupture_site_filter( source.iter_ruptures(), s_sites): # extract rupture parameters of interest mags.append(rupture.mag) [jb_dist] = rupture.surface.get_joyner_boore_distance(sitemesh) dists.append(jb_dist) [closest_point] = rupture.surface.get_closest_points(sitemesh) lons.append(closest_point.longitude) lats.append(closest_point.latitude) tect_reg_types.append(tect_reg) # compute conditional probability of exceeding iml given # the current rupture, and different epsilon level, that is # ``P(IMT >= iml | rup, epsilon_bin)`` for each of epsilon bins sctx, rctx, dctx = cmaker.make_contexts(sitecol, rupture) [poes_given_rup_eps] = gsim.disaggregate_poe( sctx, rctx, dctx, imt, iml, truncation_level, n_epsilons ) # collect probability of a rupture causing no exceedances probs_no_exceed.append( rupture.get_probability_no_exceedance(poes_given_rup_eps) ) except Exception as err: etype, err, tb = sys.exc_info() msg = 'An error occurred with source id=%s. Error: %s' msg %= (source.source_id, str(err)) raise_(etype, msg, tb) mags = numpy.array(mags, float) dists = numpy.array(dists, float) lons = numpy.array(lons, float) lats = numpy.array(lats, float) tect_reg_types = numpy.array(tect_reg_types, int) probs_no_exceed = numpy.array(probs_no_exceed, float) trt_bins = [ trt for (num, trt) in sorted((num, trt) for (trt, num) in trt_nums.items()) ] return (mags, dists, lons, lats, tect_reg_types, trt_bins, probs_no_exceed) def _define_bins(bins_data, mag_bin_width, dist_bin_width, coord_bin_width, truncation_level, n_epsilons): """ Define bin edges for disaggregation histograms. Given bins data as provided by :func:`_collect_bins_data`, this function finds edges of histograms, taking into account maximum and minimum values of magnitude, distance and coordinates as well as requested sizes/numbers of bins. """ mags, dists, lons, lats, tect_reg_types, trt_bins, _ = bins_data mag_bins = mag_bin_width * numpy.arange( int(numpy.floor(mags.min() / mag_bin_width)), int(numpy.ceil(mags.max() / mag_bin_width) + 1) ) dist_bins = dist_bin_width * numpy.arange( int(numpy.floor(dists.min() / dist_bin_width)), int(numpy.ceil(dists.max() / dist_bin_width) + 1) ) west, east, north, south = get_spherical_bounding_box(lons, lats) west = numpy.floor(west / coord_bin_width) * coord_bin_width east = numpy.ceil(east / coord_bin_width) * coord_bin_width lon_extent = get_longitudinal_extent(west, east) lon_bins, _, _ = npoints_between( west, 0, 0, east, 0, 0, numpy.round(lon_extent / coord_bin_width + 1) ) lat_bins = coord_bin_width * numpy.arange( int(numpy.floor(south / coord_bin_width)), int(numpy.ceil(north / coord_bin_width) + 1) ) eps_bins = numpy.linspace(-truncation_level, truncation_level, n_epsilons + 1) return mag_bins, dist_bins, lon_bins, lat_bins, eps_bins, trt_bins def _arrange_data_in_bins(bins_data, bin_edges): """ Given bins data, as it comes from :func:`_collect_bins_data`, and bin edges from :func:`_define_bins`, create a normalized 6d disaggregation matrix. """ (mags, dists, lons, lats, tect_reg_types, trt_bins, probs_no_exceed) = \ bins_data mag_bins, dist_bins, lon_bins, lat_bins, eps_bins, trt_bins = bin_edges dim1 = len(mag_bins) - 1 dim2 = len(dist_bins) - 1 dim3 = len(lon_bins) - 1 dim4 = len(lat_bins) - 1 shape = (dim1, dim2, dim3, dim4, len(eps_bins) - 1, len(trt_bins)) diss_matrix = numpy.ones(shape) # find bin indexes of rupture attributes; bins are assumed closed # on the lower bound, and open on the upper bound, that is [ ) # longitude values need an ad-hoc method to take into account # the 'international date line' issue # the 'minus 1' is needed because the digitize method returns the index # of the upper bound of the bin mags_idx = numpy.digitize(mags, mag_bins) - 1 dists_idx = numpy.digitize(dists, dist_bins) - 1 lons_idx = _digitize_lons(lons, lon_bins) lats_idx = numpy.digitize(lats, lat_bins) - 1 # because of the way numpy.digitize works, values equal to the last bin # edge are associated to an index equal to len(bins) which is not a valid # index for the disaggregation matrix. Such values are assumed to fall # in the last bin. mags_idx[mags_idx == dim1] = dim1 - 1 dists_idx[dists_idx == dim2] = dim2 - 1 lons_idx[lons_idx == dim3] = dim3 - 1 lats_idx[lats_idx == dim4] = dim4 - 1 for i, (i_mag, i_dist, i_lon, i_lat, i_trt) in \ enumerate( zip(mags_idx, dists_idx, lons_idx, lats_idx, tect_reg_types)): diss_matrix[i_mag, i_dist, i_lon, i_lat, :, i_trt] *= \ probs_no_exceed[i, :] return 1 - diss_matrix def _digitize_lons(lons, lon_bins): """ Return indices of the bins to which each value in lons belongs. Takes into account the case in which longitude values cross the international date line. :parameter lons: An instance of `numpy.ndarray`. :parameter lons_bins: An instance of `numpy.ndarray`. """ if cross_idl(lon_bins[0], lon_bins[-1]): idx = numpy.zeros_like(lons, dtype=numpy.int) for i_lon in range(len(lon_bins) - 1): extents = get_longitudinal_extent(lons, lon_bins[i_lon + 1]) lon_idx = extents > 0 if i_lon != 0: extents = get_longitudinal_extent(lon_bins[i_lon], lons) lon_idx &= extents >= 0 idx[lon_idx] = i_lon return numpy.array(idx) else: return numpy.digitize(lons, lon_bins) - 1
[docs]def mag_pmf(matrix): """ Fold full disaggregation matrix to magnitude PMF. :returns: 1d array, a histogram representing magnitude PMF. """ nmags, ndists, nlons, nlats, neps, ntrts = matrix.shape mag_pmf = numpy.zeros(nmags) for i in range(nmags): mag_pmf[i] = numpy.prod( [1 - matrix[i][j][k][l][m][n] for j in range(ndists) for k in range(nlons) for l in range(nlats) for m in range(neps) for n in range(ntrts)] ) return 1 - mag_pmf
[docs]def dist_pmf(matrix): """ Fold full disaggregation matrix to distance PMF. :returns: 1d array, a histogram representing distance PMF. """ nmags, ndists, nlons, nlats, neps, ntrts = matrix.shape dist_pmf = numpy.zeros(ndists) for j in range(ndists): dist_pmf[j] = numpy.prod( [1 - matrix[i][j][k][l][m][n] for i in range(nmags) for k in range(nlons) for l in range(nlats) for m in range(neps) for n in range(ntrts)] ) return 1 - dist_pmf
[docs]def trt_pmf(matrix): """ Fold full disaggregation matrix to tectonic region type PMF. :returns: 1d array, a histogram representing tectonic region type PMF. """ nmags, ndists, nlons, nlats, neps, ntrts = matrix.shape trt_pmf = numpy.zeros(ntrts) for n in range(ntrts): trt_pmf[n] = numpy.prod( [1 - matrix[i][j][k][l][m][n] for i in range(nmags) for j in range(ndists) for k in range(nlons) for l in range(nlats) for m in range(neps)] ) return 1 - trt_pmf
[docs]def mag_dist_pmf(matrix): """ Fold full disaggregation matrix to magnitude / distance PMF. :returns: 2d array. First dimension represents magnitude histogram bins, second one -- distance histogram bins. """ nmags, ndists, nlons, nlats, neps, ntrts = matrix.shape mag_dist_pmf = numpy.zeros((nmags, ndists)) for i in range(nmags): for j in range(ndists): mag_dist_pmf[i][j] = numpy.prod( [1 - matrix[i][j][k][l][m][n] for k in range(nlons) for l in range(nlats) for m in range(neps) for n in range(ntrts)] ) return 1 - mag_dist_pmf
[docs]def mag_dist_eps_pmf(matrix): """ Fold full disaggregation matrix to magnitude / distance / epsilon PMF. :returns: 3d array. First dimension represents magnitude histogram bins, second one -- distance histogram bins, third one -- epsilon histogram bins. """ nmags, ndists, nlons, nlats, neps, ntrts = matrix.shape mag_dist_eps_pmf = numpy.zeros((nmags, ndists, neps)) for i in range(nmags): for j in range(ndists): for m in range(neps): mag_dist_eps_pmf[i][j][m] = numpy.prod( [1 - matrix[i][j][k][l][m][n] for k in range(nlons) for l in range(nlats) for n in range(ntrts)] ) return 1 - mag_dist_eps_pmf
[docs]def lon_lat_pmf(matrix): """ Fold full disaggregation matrix to longitude / latitude PMF. :returns: 2d array. First dimension represents longitude histogram bins, second one -- latitude histogram bins. """ nmags, ndists, nlons, nlats, neps, ntrts = matrix.shape lon_lat_pmf = numpy.zeros((nlons, nlats)) for k in range(nlons): for l in range(nlats): lon_lat_pmf[k][l] = numpy.prod( [1 - matrix[i][j][k][l][m][n] for i in range(nmags) for j in range(ndists) for m in range(neps) for n in range(ntrts)] ) return 1 - lon_lat_pmf
[docs]def mag_lon_lat_pmf(matrix): """ Fold full disaggregation matrix to magnitude / longitude / latitude PMF. :returns: 3d array. First dimension represents magnitude histogram bins, second one -- longitude histogram bins, third one -- latitude histogram bins. """ nmags, ndists, nlons, nlats, neps, ntrts = matrix.shape mag_lon_lat_pmf = numpy.zeros((nmags, nlons, nlats)) for i in range(nmags): for k in range(nlons): for l in range(nlats): mag_lon_lat_pmf[i][k][l] = numpy.prod( [1 - matrix[i][j][k][l][m][n] for j in range(ndists) for m in range(neps) for n in range(ntrts)] ) return 1 - mag_lon_lat_pmf
[docs]def lon_lat_trt_pmf(matrix): """ Fold full disaggregation matrix to longitude / latitude / tectonic region type PMF. :returns: 3d array. Dimension represent longitude, latitude and tectonic region type histogram bins respectively. """ nmags, ndists, nlons, nlats, neps, ntrts = matrix.shape lon_lat_trt_pmf = numpy.zeros((nlons, nlats, ntrts)) for k in range(nlons): for l in range(nlats): for n in range(ntrts): lon_lat_trt_pmf[k][l][n] = numpy.prod( [1 - matrix[i][j][k][l][m][n] for i in range(nmags) for j in range(ndists) for m in range(neps)] ) return 1 - lon_lat_trt_pmf
# this dictionary is useful to extract a fixed set of # submatrices from the full disaggregation matrix pmf_map = collections.OrderedDict([ (('Mag', ), mag_pmf), (('Dist', ), dist_pmf), (('TRT', ), trt_pmf), (('Mag', 'Dist'), mag_dist_pmf), (('Mag', 'Dist', 'Eps'), mag_dist_eps_pmf), (('Lon', 'Lat'), lon_lat_pmf), (('Mag', 'Lon', 'Lat'), mag_lon_lat_pmf), (('Lon', 'Lat', 'TRT'), lon_lat_trt_pmf), ])